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PLM3-1_170_b1_sep16_scaffold_210

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_210_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

2..802
DNA (801bp) protein (267aa)
outer membrane protein/protective antigen OMA87 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
outer membrane protein/protective antigen OMA87
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b1_sep16_scaffold_210_2
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(815..1411)
DNA (597bp) protein (199aa)
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptidase S1 and S6 chymotrypsin/Hap
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_210_3
unknown

Not on your lists

comp(1744..2868)
DNA (1125bp) protein (375aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_210_4
GWA2_Bdellovibrionales_49_15_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(2977..3879)
DNA (903bp) protein (301aa)
hypothetical protein Tax=Chlorogloeopsis fritschii RepID=UPI00030DD34C
Tax=GWA2_Bdellovibrionales_49_15_curated
PLM3-1_170_b1_sep16_scaffold_210_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

4459..4902
DNA (444bp) protein (148aa)
PilT protein domain protein Tax=Mycobacterium sp. (strain JDM601) RepID=F5Z0Q9_MYCSD
twitching motility protein PilT
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_210_6
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

4926..5105
DNA (180bp) protein (60aa)
Uncharacterized protein Tax=Cyanothece sp. CCY0110 RepID=A3IQ60_9CHRO
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3-1_170_b1_sep16_scaffold_210_7
unknown

Not on your lists

5694..5903
DNA (210bp) protein (70aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_210_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

5900..6274
DNA (375bp) protein (125aa)
recombinase bin=CNBR_ACIDO species=Ochrobactrum anthropi genus=Ochrobactrum taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
recombinase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_210_9
R_OD1_Yanofskybacteria_41_34, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

6539..7141
DNA (603bp) protein (201aa)
Uncharacterized protein bin=GWF2_Bacteroidetes_41_31 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Yanofskybacteria_41_34_curated
PLM3-1_170_b1_sep16_scaffold_210_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(7149..7451)
DNA (303bp) protein (101aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_210_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(7644..8357)
DNA (714bp) protein (238aa)
rpoD; RNA polymerase sigma factor rpoD; K03086 RNA polymerase primary sigma factor bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rpoD; RNA polymerase sigma-70 factor RpoD
Tax=CSP1_6_Rokubacteria
PLM3-1_170_b1_sep16_scaffold_210_12
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(8585..10330)
DNA (1746bp) protein (582aa)
hypothetical protein Tax=Cupriavidus sp. WS RepID=UPI00036EEB18
ycbB; hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_210_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(10608..11258)
DNA (651bp) protein (217aa)
Uncharacterized protein Tax=Afipia broomeae ATCC 49717 RepID=K8P3I7_9BRAD
osmotically inducible sensory protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_210_14
unknown

Not on your lists

comp(11492..11737)
DNA (246bp) protein (82aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_210_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(11734..12126)
DNA (393bp) protein (131aa)
Uncharacterized protein Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2QXU9_PIRSD
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_210_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(12161..12610)
DNA (450bp) protein (150aa)
Osmotically inducible protein Y domain protein Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F1Z2_ACIC5
osmotically inducible protein Y domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_210_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(12798..13058)
DNA (261bp) protein (87aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_210_18
unknown

Not on your lists

13082..13291
DNA (210bp) protein (70aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_210_19
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

13372..13839
DNA (468bp) protein (156aa)
Universal stress protein Tax=Planctomyces maris DSM 8797 RepID=A6C8P0_9PLAN
Stress protein UspA-like protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_210_20
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(13934..14686)
DNA (753bp) protein (251aa)
TonB family protein; K03832 periplasmic protein TonB bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
TonB family protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_210_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

14979..15182
DNA (204bp) protein (68aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_210_22
RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15221..15754
DNA (534bp) protein (178aa)
Putative uncharacterized protein bin=GWA2_OP3_53_43 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated
PLM3-1_170_b1_sep16_scaffold_210_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(15771..17096)
DNA (1326bp) protein (442aa)
PAS/PAC sensor signal transduction histidine kinase bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PAS domain S-box
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_210_24
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

17227..17613
DNA (387bp) protein (129aa)
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JWJ7_DESAC
Fis family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_210_25
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

17677..19068
DNA (1392bp) protein (464aa)
sigma-54 dependent DNA-binding response regulator bin=CNBR_ACIDO species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Fis family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_210_26
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

19257..19514
DNA (258bp) protein (86aa)
Nitrogen-fixing NifU domain protein Tax=Thermoanaerobacter RepID=B0K3W8_THEPX
NifU domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b1_sep16_scaffold_210_27
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19545..19865)
DNA (321bp) protein (107aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1Z296_9BACT
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
PLM3-1_170_b1_sep16_scaffold_210_28
Cronobacter dublinensis, Cronobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19822..20124)
DNA (303bp) protein (101aa)
Uncharacterized protein Tax=Cronobacter dublinensis 582 RepID=K8AUA2_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:CCJ84281.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Cronobacter.;" source="Cronobacter dublinensis 582.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_210_29
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(20560..21681)
DNA (1122bp) protein (374aa)
export ABC transporter permease bin=CNBR_ACIDO species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ABC transporter
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_210_30
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(21749..22864)
DNA (1116bp) protein (372aa)
ABC transporter; K09686 antibiotic transport system permease protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ABC transporter
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
Displaying items 1-30 of 35 in total

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