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PLM3-1_170_b1_sep16_scaffold_1893

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_1893_1
CSP1_5_NC10, NC10, Bacteria

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comp(2..1018)
DNA (1017bp) protein (339aa)
argM; succinylornithine transaminase, also has acetylornitine transaminase activity, PLP-dependent (EC:2.6.1.11 2.6.1.-) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
argM; succinylornithine transaminase, also has acetylornitine transaminase activity, PLP-dependent (EC:2.6.1.11 2.6.1.-)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1893_2
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(1030..2520)
DNA (1491bp) protein (497aa)
ycbD; aldehyde dehydrogenase ycbD (EC:1.2.1.3) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
ycbD; aldehyde dehydrogenase ycbD (EC:1.2.1.3)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1893_3
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(2673..3107)
DNA (435bp) protein (145aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1893_4
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3219..6116)
DNA (2898bp) protein (966aa)
Uncharacterized protein Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WVQ4_KYRT2
Uncharacterized protein {ECO:0000313|EMBL:ADG07597.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Kyrpidia.;" source="Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) (Bacillus; tusciae).;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_1893_5

Not on your lists

comp(6088..6774)
DNA (687bp) protein (229aa)
Putative uncharacterized protein Tax=Waddlia chondrophila 2032/99 RepID=F8LCA7_9CHLA
Marine sediment metagenome DNA, contig: S01H1_L00638 {ECO:0000313|EMBL:GAF85394.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b1_sep16_scaffold_1893_6
CSP1_5_NC10, NC10, Bacteria

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comp(6815..7801)
DNA (987bp) protein (329aa)
parB; chromosome partitioning protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
parB; chromosome partitioning protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1893_7
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(7770..8552)
DNA (783bp) protein (261aa)
ParA family ATPase; K03496 chromosome partitioning protein bin=bin3_NC10 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
cobyrinic acid ac-diamide synthase
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1893_8
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(8724..9413)
DNA (690bp) protein (230aa)
Methyltransferase gidB (Glucose-inhibited division protein B) (EC:2.1.-.-) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
Methyltransferase gidB (Glucose-inhibited division protein B) (EC:2.1.-.-)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1893_9
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(9448..12060)
DNA (2613bp) protein (871aa)
tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-] bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
tRNA modification GTPase TrmE
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1893_10
unknown

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12645..13193
DNA (549bp) protein (183aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1893_11
CSP1_5_NC10, NC10, Bacteria

Not on your lists

13845..14948
DNA (1104bp) protein (368aa)
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1893_12
CSP1_5_NC10, NC10, Bacteria

Not on your lists

15055..17490
DNA (2436bp) protein (812aa)
gyrB; DNA gyrase subunit B (EC:5.99.1.3) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1893_13
CSP1_5_NC10, NC10, Bacteria

Not on your lists


17637..20180
DNA (2544bp) protein (848aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1893_14
CSP1_5_NC10, NC10, Bacteria

Not on your lists

20192..21481
DNA (1290bp) protein (430aa)
serS; Seryl-tRNA synthetase (EC:6.1.1.11) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
serS; Seryl-tRNA synthetase (EC:6.1.1.11)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1893_trna_1
unknown

Not on your lists

21620..21703
DNA (84bp)
transferRNA Ser
PLM3-1_170_b1_sep16_scaffold_1893_trna_2
unknown

Not on your lists

21775..21865
DNA (91bp)
transferRNA Ser
PLM3-1_170_b1_sep16_scaffold_1893_trna_3
unknown

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21980..22053
DNA (74bp)
transferRNA Arg
PLM3-1_170_b1_sep16_scaffold_1893_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(22117..23097)
DNA (981bp) protein (327aa)
Nitrate reductase (NADH) {ECO:0000313|EMBL:EEF59049.1}; EC=1.7.1.1 {ECO:0000313|EMBL:EEF59049.1};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Nitrate reductase (NADH) Tax=Pedosphaera parvula Ellin514 RepID=B9XM56_9BACT
putative sulfite oxidase protein
Displaying 18 items

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