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PLM3-1_170_b1_sep16_scaffold_1973

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_1973_trna_2
unknown

Not on your lists

comp(3282..3354)
DNA (73bp)
transferRNA Ala
PLM3-1_170_b1_sep16_scaffold_1973_trna_1
unknown

Not on your lists

comp(3431..3504)
DNA (74bp)
transferRNA Ile
PLM3-1_170_b1_sep16_scaffold_1973_16S_1
unknown

Not on your lists

comp(3654..5212)
DNA (1559bp)
16S ribosomal RNA (16S rRNA)
PLM3-1_170_b1_sep16_scaffold_1973_1
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(5498..6709)
DNA (1212bp) protein (404aa)
tyrS; tyrosyl-tRNA synthetase TyrS (EC:6.1.1.1) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1973_2
CSP1_5_NC10, NC10, Bacteria

Not on your lists

6830..9025
DNA (2196bp) protein (732aa)
mrcA; penicillin-binding protein 1A (EC:2.4.2.- 3.4.-.-) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
mrcA; penicillin-binding protein 1A (EC:2.4.2.- 3.4.-.-)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1973_3
CSP1_5_NC10, NC10, Bacteria

Not on your lists

9365..10813
DNA (1449bp) protein (483aa)
ATP-dependent RNA helicase with P-loop hydrolase domain (rhlE gene) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
ATP-dependent RNA helicase with P-loop hydrolase domain (rhlE gene)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1973_4
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(10923..11225)
DNA (303bp) protein (101aa)
id=14428922 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1973_5
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(11222..12085)
DNA (864bp) protein (288aa)
folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methenyl-tetrahydrofolate cyclohydrolase FolD (EC:1.5.1.5 3.5.4.9) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methenyl-tetrahydrofolate cyclohydrolase FolD (EC:1.5.1.5 3.5.4.9)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1973_6
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(12094..12888)
DNA (795bp) protein (265aa)
metallo-phosphoesterase bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
metallo-phosphoesterase
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1973_7
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(12912..14462)
DNA (1551bp) protein (517aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1973_8
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14493..15089)
DNA (597bp) protein (199aa)
5-formyltetrahydrofolate cyclo-ligase Tax=Clostridium papyrosolvens C7 RepID=U4R628_9CLOT
5-formyltetrahydrofolate cyclo-ligase
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
PLM3-1_170_b1_sep16_scaffold_1973_9
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(15148..15423)
DNA (276bp) protein (92aa)
id=14428917 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1973_10
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(15420..15743)
DNA (324bp) protein (108aa)
id=14428916 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1973_11
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(15740..15982)
DNA (243bp) protein (81aa)
id=14428915 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1973_12
CSP1_5_NC10, NC10, Bacteria

Not on your lists


comp(15979..18378)
DNA (2400bp) protein (800aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin3_NC10 organism_group=NC10
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1973_13
CSP1_5_NC10, NC10, Bacteria

Not on your lists

18809..19780
DNA (972bp) protein (324aa)
hypothetical protein bin=bin3_NC10 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1973_14
CSP1_5_NC10, NC10, Bacteria

Not on your lists

19901..20269
DNA (369bp) protein (123aa)
putative peptidase bin=bin3_NC10 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin3_NC10 organism_group=NC10
putative peptidase
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1973_15
CSP1_5_NC10, NC10, Bacteria

Not on your lists

20311..20862
DNA (552bp) protein (184aa)
putative peptidase bin=bin3_NC10 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin3_NC10 organism_group=NC10
putative peptidase
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1973_16
CSP1_5_NC10, NC10, Bacteria

Not on your lists

20886..22265
DNA (1380bp) protein (460aa)
rumA; RNA methyltransferase, TrmA family (EC:2.1.1.190) bin=bin3_NC10 species=Gloeobacter kilaueensis genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
rumA; RNA methyltransferase, TrmA family (EC:2.1.1.190)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_1973_17

Not on your lists

22338..22781
DNA (444bp) protein (148aa)
Marine sediment metagenome DNA, contig: S12H4_L00493 {ECO:0000313|EMBL:GAI76330.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Hypothetical conserved protein bin=GWF2_Methylomirabilis_70_14 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_1973_18
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22778..23011
DNA (234bp) protein (78aa)
Uncharacterized protein Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FB50_DESAA
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_43_22_curated
Displaying 21 items

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