ggKbase home page

PLM3-1_170_b1_sep16_scaffold_596

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_596_1
CSP1_5_NC10, NC10, Bacteria

Not on your lists

2..178
DNA (177bp) protein (59aa)
NADH dehydrogenase (ubiquinone) (EC:1.6.5.3) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
NADH dehydrogenase (ubiquinone) (EC:1.6.5.3)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

212..994
DNA (783bp) protein (261aa)
2-oxoglutarate dehydrogenase, E1 subunit (EC:1.2.4.2)
hypothetical protein Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI000363A736
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_596_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

1005..2927
DNA (1923bp) protein (641aa)
sucA; 2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2)
hypothetical protein Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI000363A736
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_596_4
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

2931..4211
DNA (1281bp) protein (427aa)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61;; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5T5_SPHTD
2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase
PLM3-1_170_b1_sep16_scaffold_596_5
CSP1_5_NC10, NC10, Bacteria

Not on your lists

4438..5559
DNA (1122bp) protein (374aa)
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5); K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5] bin=bin3_NC10 species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin3_NC10 organism_group=NC10
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_6
CSP1_5_NC10, NC10, Bacteria

Not on your lists

5646..6521
DNA (876bp) protein (292aa)
succinyl-CoA synthetase, alpha subunit; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin3_NC10 organism_group=NC10
succinyl-CoA synthetase, alpha subunit
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_7
CSP1_5_NC10, NC10, Bacteria

Not on your lists

6623..7069
DNA (447bp) protein (149aa)
nucleoside-diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
nucleoside-diphosphate kinase (EC:2.7.4.6)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_8
CSP1_5_NC10, NC10, Bacteria

Not on your lists

7206..7718
DNA (513bp) protein (171aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_9
CSP1_5_NC10, NC10, Bacteria

Not on your lists


7731..7913
DNA (183bp) protein (61aa)
rpmF; 50S ribosomal protein L32; K02911 large subunit ribosomal protein L32 bin=bin3_NC10 species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin3_NC10 organism_group=NC10
rpmF; 50S ribosomal protein L32
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_10
CSP1_5_NC10, NC10, Bacteria

Not on your lists

7951..8982
DNA (1032bp) protein (344aa)
plsX; fatty acid/phospholipid synthesis protein, methyltransferase domain bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
plsX; fatty acid/phospholipid synthesis protein, methyltransferase domain
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_11
CSP1_5_NC10, NC10, Bacteria

Not on your lists

8993..9976
DNA (984bp) protein (328aa)
fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III (Beta-ketoacyl-ACP synthase III)(KAS III) (EC:2.3.1.41) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III (Beta-ketoacyl-ACP synthase III)(KAS III) (EC:2.3.1.41)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_12
CSP1_5_NC10, NC10, Bacteria

Not on your lists

10025..10966
DNA (942bp) protein (314aa)
fabD; malonyl CoA-acyl carrier protein transacylase (EC:2.3.1.39); K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] bin=bin3_NC10 species=Myxococcus xanthus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
fabD; malonyl CoA-ACP transacylase (EC:2.3.1.39)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_13
CSP1_5_NC10, NC10, Bacteria

Not on your lists

10963..11703
DNA (741bp) protein (247aa)
3-oxoacyl-(acyl-carrier-protein) reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] bin=bin3_NC10 species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
fabG; 3-ketoacyl-ACP reductase
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_14
CSP1_5_NC10, NC10, Bacteria

Not on your lists

11741..11983
DNA (243bp) protein (81aa)
acyl carrier protein (ACP) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
acyl carrier protein (ACP)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_15
CSP1_5_NC10, NC10, Bacteria

Not on your lists

12017..13255
DNA (1239bp) protein (413aa)
fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II (EC:2.3.1.41) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II (EC:2.3.1.41)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_16
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(13334..13822)
DNA (489bp) protein (163aa)
cytosol aminopeptidase bin=bin3_NC10 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
cytosol aminopeptidase
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_17
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(13819..14277)
DNA (459bp) protein (153aa)
nusB; N utilization substance protein B bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
nusB; N utilization substance protein B
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_18
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(14243..14752)
DNA (510bp) protein (170aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] bin=bin3_NC10 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=bin3_NC10 organism_group=NC10
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_19
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(14767..15984)
DNA (1218bp) protein (406aa)
ribBA; 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase (EC:3.5.4.25 4.1.99.12) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
ribBA; 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase (EC:3.5.4.25 4.1.99.12)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_20
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(16004..16651)
DNA (648bp) protein (216aa)
riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] bin=bin3_NC10 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
riboflavin synthase subunit alpha (EC:2.5.1.9)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_21
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(16656..17777)
DNA (1122bp) protein (374aa)
ribD; riboflavin biosynthesis protein RibD (EC:3.5.4.26 1.1.1.193) bin=bin3_NC10 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
ribD; riboflavin biosynthesis protein RibD (EC:3.5.4.26 1.1.1.193)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_22
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(17881..18789)
DNA (909bp) protein (303aa)
ftsY; signal recognition particle-docking protein ftsy; K03110 fused signal recognition particle receptor bin=bin3_NC10 species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
signal recognition particle-docking protein FtsY
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_23
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(18811..22440)
DNA (3630bp) protein (1210aa)
Chromosome partition protein smc bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
Chromosome partition protein smc
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_596_24
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(22573..22794)
DNA (222bp) protein (74aa)
ribonuclease III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3] bin=bin3_NC10 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
rnc; ribonuclease 3 (EC:3.1.26.3)
Tax=CSP1_5_NC10
Displaying 24 items

View Taxonomy