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PLM3-1_170_b1_sep16_scaffold_7950

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_7950_1
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

2..307
DNA (306bp) protein (102aa)
hypothetical protein bin=CNBR_ACIDO species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_7950_2
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

300..572
DNA (273bp) protein (91aa)
Xre family DNA-binding protein bin=CNBR_ACIDO species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Xre family DNA-binding protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_7950_3
CG_CP02_01, CG_CP02, Bacteria

Not on your lists

comp(843..1856)
DNA (1014bp) protein (338aa)
quinolinate synthase (EC:4.1.99.- 2.5.1.72)
quinolinate synthetase (EC:4.1.99.-); K03517 quinolinate synthase [EC:2.5.1.72] bin=GW2011_AR10_complete species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=CG_CP02_01
PLM3-1_170_b1_sep16_scaffold_7950_4
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1996..2556
DNA (561bp) protein (187aa)
id=2101453 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b1_sep16_scaffold_7950_5
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2782..3105)
DNA (324bp) protein (108aa)
Glutaredoxin bin=GWD2_Deltaproteobacteria_55_8 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
grxD; glutaredoxin
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b1_sep16_scaffold_7950_6
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3120..3380)
DNA (261bp) protein (87aa)
BolA family protein bin=GWD2_Deltaproteobacteria_55_8 species=Gloeocapsa sp. PCC 7428 genus=Gloeocapsa taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
transcriptional regulator, BolA protein family
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b1_sep16_scaffold_7950_7
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3412..3780)
DNA (369bp) protein (123aa)
Cold-shock DNA-binding domain protein bin=GWD2_Deltaproteobacteria_55_8 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
alkyl hydroperoxide reductase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b1_sep16_scaffold_7950_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3799..3927)
DNA (129bp) protein (43aa)
id=1956125 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b1_sep16_scaffold_7950_9
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3951..4244)
DNA (294bp) protein (98aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Cupriavidus pinatubonensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b1_sep16_scaffold_7950_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4257..5249)
DNA (993bp) protein (331aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b1_sep16_scaffold_7950_11
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5291..5569)
DNA (279bp) protein (93aa)
id=1956121 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b1_sep16_scaffold_7950_12
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5633..5992)
DNA (360bp) protein (120aa)
short-chain dehydrogenase/reductase SDR bin=bin3_NC10 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin3_NC10 organism_group=NC10
short-chain dehydrogenase/reductase SDR
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Displaying 12 items

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