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PLM3-1_170_b1_sep16_scaffold_1860

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_1860_1
GWC2_Pseudomonadales_63_15_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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31..450
DNA (420bp) protein (140aa)
DNA methylase, putative Tax=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) RepID=Q8KBQ5_CHLTE
DNA methylase
Tax=GWC2_Pseudomonadales_63_15_curated
PLM3-1_170_b1_sep16_scaffold_1860_2

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715..1287
DNA (573bp) protein (191aa)
Marine sediment metagenome DNA, contig: S06H3_L01043 {ECO:0000313|EMBL:GAI16876.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b1_sep16_scaffold_1860_3
unknown

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comp(1650..1964)
DNA (315bp) protein (105aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1860_4
unknown

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2428..3558
DNA (1131bp) protein (377aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1860_5

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3718..5706
DNA (1989bp) protein (663aa)
Uncharacterized protein Tax=Streptomyces hygroscopicus subsp. jinggangensis RepID=H2JY87_STRHJ
Marine sediment metagenome DNA, contig: S06H3_L01043 {ECO:0000313|EMBL:GAI16878.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_1860_6
unknown

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comp(5896..6246)
DNA (351bp) protein (117aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI0003636035
PLM3-1_170_b1_sep16_scaffold_1860_7
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

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6477..6938
DNA (462bp) protein (154aa)
petE; plastocyanin bin=RBG_19FT_COMBO_GAL15_69_19 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
blue (type 1) copper domain-containing protein
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
PLM3-1_170_b1_sep16_scaffold_1860_8
Methanosarcina sp. Kolksee, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(7175..8401)
DNA (1227bp) protein (409aa)
TPR-repeat protein Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4C0B0_METCG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKB47158.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. Kolksee.;"
PLM3-1_170_b1_sep16_scaffold_1860_9
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(8403..9593)
DNA (1191bp) protein (397aa)
NB-ARC domain protein Tax=Roseiflexus sp. (strain RS-1) RepID=A5UXZ0_ROSS1
NB-ARC domain-containing protein
NB-ARC domain protein {ECO:0000313|EMBL:ABQ91493.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
PLM3-1_170_b1_sep16_scaffold_1860_10
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(9661..11907)
DNA (2247bp) protein (749aa)
TPR-repeat protein Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4C0B0_METCG
TPR-repeat-containing protein
TPR-repeat protein {ECO:0000313|EMBL:AEB69175.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC; 103675 / OCM 69 / GP-6) (Methanothrix concilii).;"
PLM3-1_170_b1_sep16_scaffold_1860_11
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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comp(12159..12593)
DNA (435bp) protein (145aa)
Peptidase C14, caspase catalytic subunit p20 Tax=Oscillochloris trichoides DG-6 RepID=E1IEM0_9CHLR
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1860_12
BJP_IG2069_Anaerolineales_43_63, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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comp(12822..13487)
DNA (666bp) protein (222aa)
Tax=BJP_IG2069_Anaerolineales_43_63
PLM3-1_170_b1_sep16_scaffold_1860_13
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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comp(13893..16067)
DNA (2175bp) protein (725aa)
Uncharacterized protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I2X8_CALAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL99615.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM3-1_170_b1_sep16_scaffold_1860_14
unknown

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comp(16079..16198)
DNA (120bp) protein (40aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1860_15
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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comp(16248..17516)
DNA (1269bp) protein (423aa)
Uncharacterized protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I2X9_CALAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL99616.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM3-1_170_b1_sep16_scaffold_1860_16
RBG_16_Gammaproteobacteria_66_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17685..17969)
DNA (285bp) protein (95aa)
Acylphosphatase Tax=Thermococcus RepID=G0HLW2_THES4 bin=16ft_combo_ws3_JS1 species=unknown genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
acyP; acylphosphatase
Tax=RBG_16_Gammaproteobacteria_66_13_curated
PLM3-1_170_b1_sep16_scaffold_1860_17
GWF2_OP11_38_6, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(18026..18382)
DNA (357bp) protein (119aa)
S23 ribosomal protein Tax=uncultured bacterium RepID=K2BX04_9BACT
S23 ribosomal protein {ECO:0000313|EMBL:KKQ76255.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWF2_38_6.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_1860_18
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(18987..20081)
DNA (1095bp) protein (365aa)
hypothetical protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1860_19
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

comp(20368..21333)
DNA (966bp) protein (322aa)
hypothetical protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
PLM3-1_170_b1_sep16_scaffold_1860_20
RBG_16_Chloroflexi_64_43_curated, Chloroflexi, Bacteria

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comp(21584..22048)
DNA (465bp) protein (155aa)
putative M50B family peptidase (EC:3.4.24.-); K11749 regulator of sigma E protease [EC:3.4.24.-] bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
peptidase M50 family protein
Tax=RBG_16_Chloroflexi_64_43_curated
Displaying 20 items

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