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PLM3-1_170_b1_sep16_scaffold_7718

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_7718_1
unknown

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237..491
DNA (255bp) protein (85aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_7718_2
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(436..1443)
DNA (1008bp) protein (336aa)
pseudouridylate synthase-like protein; K07583 tRNA pseudouridine synthase 10 [EC:5.4.99.-] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
pseudouridylate synthase-like protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_7718_3

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comp(1641..2810)
DNA (1170bp) protein (390aa)
Signal recognition 54 kDa protein Tax=Thaumarchaeota archaeon N4 RepID=V6AR26_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKL70693.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
srp; Signal recognition particle 54 kDa protein
PLM3-1_170_b1_sep16_scaffold_7718_4
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(2803..3492)
DNA (690bp) protein (230aa)
ATP-binding protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ATP-binding protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_7718_5

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comp(3625..4035)
DNA (411bp) protein (137aa)
translation initiation factor eIF-5A bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Translation initiation factor 5A {ECO:0000256|HAMAP-Rule:MF_00085, ECO:0000256|SAAS:SAAS00016433}; Hypusine-containing protein {ECO:0000256|HAMAP-Rule:MF_00085}; eIF-5A {ECO:0000256|HAMAP-Rule:MF_00085}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_75_F06.;"
eif5A; translation elongation factor IF5A
PLM3-1_170_b1_sep16_scaffold_7718_6
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(4070..4681)
DNA (612bp) protein (204aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_7718_7
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(4774..5196)
DNA (423bp) protein (141aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_7718_trna_1
unknown

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5285..5406
DNA (122bp)
transferRNA Tyr
PLM3-1_170_b1_sep16_scaffold_7718_8
Candidatus Nitrosopumilus koreensis, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(5429..6481)
DNA (1053bp) protein (351aa)
Alcohol dehydrogenase Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B4T6_9ARCH
alcohol dehydrogenase
Alcohol dehydrogenase {ECO:0000313|EMBL:AFS80434.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus koreensis AR1.;"
PLM3-1_170_b1_sep16_scaffold_7718_9
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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6578..7579
DNA (1002bp) protein (334aa)
chromosome segregation and condensation protein ScpA; K05896 segregation and condensation protein A bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
chromosome segregation and condensation protein ScpA
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_7718_10
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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7645..8025
DNA (381bp) protein (127aa)
ribosomal protein S8E; K02995 small subunit ribosomal protein S8e bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
30S ribosomal protein S8e
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_7718_11

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8030..8329
DNA (300bp) protein (100aa)
Signal recognition particle subunit SRP19 Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B694_9ARCH
signal recognition particle subunit SRP19
Signal recognition particle 19 kDa protein {ECO:0000313|EMBL:KEQ56357.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-N04.;"
PLM3-1_170_b1_sep16_scaffold_7718_12
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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8403..8669
DNA (267bp) protein (89aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
putative H/ACA RNA-protein complex component Gar1
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_7718_13
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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8666..8995
DNA (330bp) protein (110aa)
zinc finger TFIIB-type domain-containing protein; K03124 transcription initiation factor TFIIB bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Zinc finger TFIIB-type domain-containing protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_7718_14
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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9036..9569
DNA (534bp) protein (178aa)
Zinc finger TFIIB-type domain protein Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CVF1_9ARCH
Zinc finger TFIIB-type domain protein {ECO:0000313|EMBL:EGP93253.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
Zinc finger TFIIB-type domain protein
PLM3-1_170_b1_sep16_scaffold_7718_15
Candidatus Nitrosopumilus salaria, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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9681..10448
DNA (768bp) protein (256aa)
FeS assembly ATPase SufC Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D3U6_9ARCH
FeS assembly ATPase SufC {ECO:0000313|EMBL:EIJ66389.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus salaria BD31.;"
sufC; FeS assembly ATPase SufC
PLM3-1_170_b1_sep16_scaffold_7718_16
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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10509..11309
DNA (801bp) protein (267aa)
chlorite dismutase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Chlorite dismutase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_7718_17

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11310..11489
DNA (180bp) protein (60aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL77569.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
PF08819 domain protein
Displaying 18 items

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