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PLM3-1_170_b1_sep16_scaffold_16355

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_16355_1
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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comp(158..766)
DNA (609bp) protein (203aa)
sen:SACE_1934 RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EFH82822.1}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
RNA polymerase sigma 70
PLM3-1_170_b1_sep16_scaffold_16355_2
Streptomyces avermitilis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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1182..1526
DNA (345bp) protein (115aa)
glyoxalase Tax=Streptomyces canus RepID=UPI00036306AE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAC69040.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 /; NCIMB 12804 / NRRL 8165 / MA-4680).;"
PLM3-1_170_b1_sep16_scaffold_16355_3
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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comp(1742..1975)
DNA (234bp) protein (78aa)
Uncharacterized protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TFZ3_9CHLR
hypothetical protein
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_16355_4
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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2135..2791
DNA (657bp) protein (219aa)
Tetr family transcriptional regulator Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FAM3_VERMA
TetR family transcriptional regulator
Tetr family transcriptional regulator {ECO:0000313|EMBL:AEB44638.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
PLM3-1_170_b1_sep16_scaffold_16355_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2769..3164
DNA (396bp) protein (132aa)
Uncharacterized protein Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HS66_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS62749.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
PLM3-1_170_b1_sep16_scaffold_16355_6
unknown

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comp(3180..3524)
DNA (345bp) protein (115aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_16355_7
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

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3679..4590
DNA (912bp) protein (304aa)
haloalkane dehalogenase (EC:3.8.1.5)
Alpha/beta hydrolase fold protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TYE6_9CHLR
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:EFH83226.1}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
PLM3-1_170_b1_sep16_scaffold_16355_8
unknown

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4591..5070
DNA (480bp) protein (160aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_16355_9
Methanosarcina vacuolata, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5119..5532
DNA (414bp) protein (138aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKB43964.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina vacuolata Z-761.;"
hypothetical protein bin=GWF1_Burkholderiales_GWF1_66_17 species=Pseudomonas stutzeri genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
PLM3-1_170_b1_sep16_scaffold_16355_10
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5529..6230
DNA (702bp) protein (234aa)
ribonuclease Z (EC:3.1.26.11)
Metal-dependent hydrolase Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H3T0_CAUCN
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
Displaying 10 items

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