ggKbase home page

PLM3-1_170_b1_sep16_scaffold_11116

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_11116_1

Not on your lists

comp(20..487)
DNA (468bp) protein (156aa)
SUF system FeS assembly protein, NifU family Tax=Alicyclobacillus acidocaldarius (strain Tc-4-1) RepID=F8IFY4_ALIAT
Uncharacterized protein {ECO:0000313|EMBL:KKL56171.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
iscU; NifU family SUF system FeS assembly protein
PLM3-1_170_b1_sep16_scaffold_11116_2
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(484..1584)
DNA (1101bp) protein (367aa)
cysteine desulfurase (EC:2.8.1.7)
hypothetical protein Tax=unclassified candidate division EM 19 RepID=UPI00037CFF17
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_11116_3
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(1699..3051)
DNA (1353bp) protein (451aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003611E3B
FeS assembly protein SufD
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_11116_4
Theobroma cacao, Theobroma, Malvales, rosids, Streptophyta, Viridiplantae

Not on your lists

comp(3062..3700)
DNA (639bp) protein (213aa)
transporter Tax=Rhodopseudomonas sp. B29 RepID=UPI00034751C0
Non-intrinsic ABC protein 7 isoform 3 {ECO:0000313|EMBL:EOY19378.1}; species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.;" source="Theobroma cacao (Cacao) (Cocoa).;"
FeS assembly ATPase SufC
PLM3-1_170_b1_sep16_scaffold_11116_5
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(3807..5273)
DNA (1467bp) protein (489aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003636F6C
Fe-S cluster assembly protein SufB
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_11116_6
BJP_IG2069_Chloroflexi_70_12, Chloroflexi, Bacteria

Not on your lists

5426..6916
DNA (1491bp) protein (497aa)
major facilitator superfamily protein bin=bin8_Chloro species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
major facilitator family transporter
Tax=BJP_IG2069_Chloroflexi_70_12
PLM3-1_170_b1_sep16_scaffold_11116_7
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6934..7353)
DNA (420bp) protein (140aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI000361EC01
pyridoxine 5'-phosphate oxidase V related favin-nucleotide-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
PLM3-1_170_b1_sep16_scaffold_11116_8
Streptomyces tsukubaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7490..7849)
DNA (360bp) protein (120aa)
hypothetical protein Tax=Streptomyces sp. R1-NS-10 RepID=UPI000381439D
NADP oxidoreductase, coenzyme f420-dependent:6-phosphogluconate dehydrogenase, NAD-binding protein {ECO:0000313|EMBL:EIF94099.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces tsukubaensis NRRL18488.;"
coenzyme F420-dependent NADP oxidoreductase
PLM3-1_170_b1_sep16_scaffold_11116_9
BJP_IG2069_Chloroflexi_70_12, Chloroflexi, Bacteria

Not on your lists

comp(7846..8271)
DNA (426bp) protein (142aa)
hypothetical protein Tax=Oscillatoria sp. PCC 10802 RepID=UPI0003769644
glyoxalase/bleomycin resistance protein/dioxygenase
Tax=BJP_IG2069_Chloroflexi_70_12
PLM3-1_170_b1_sep16_scaffold_11116_10
unknown

Not on your lists

comp(8271..8441)
DNA (171bp) protein (57aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_11116_11
RBG_16_Actinobacteria_70_17_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(8636..9412)
DNA (777bp) protein (259aa)
Tax=RBG_16_Actinobacteria_70_17_curated
Displaying 11 items

View Taxonomy