ggKbase home page

PLM3-1_170_b1_sep16_scaffold_5075

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_5075_1

Not on your lists

1..924
DNA (924bp) protein (308aa)
threonine synthase (EC:4.2.3.1)
hypothetical protein Tax=candidate division OP9 bacterium OP9-77CS RepID=UPI00036D1767
Uncharacterized protein {ECO:0000313|EMBL:KKL18901.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b1_sep16_scaffold_5075_2

Not on your lists

1074..2423
DNA (1350bp) protein (450aa)
Extracellular solute-binding protein family 1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U0W6_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:KKM71936.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
family 1 extracellular solute-binding protein
PLM3-1_170_b1_sep16_scaffold_5075_3

Not on your lists

2464..3393
DNA (930bp) protein (310aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM71935.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ABC-type transporter, integral membrane subunit bin=GWC2_Chloroflexi_73_18 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
ABC transporter permease
PLM3-1_170_b1_sep16_scaffold_5075_4

Not on your lists

3393..3959
DNA (567bp) protein (189aa)
Binding-protein-dependent transport systems inner membrane component Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B0V6_HERA2
Uncharacterized protein {ECO:0000313|EMBL:KKM71934.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
binding-protein-dependent transport system inner membrane protein
PLM3-1_170_b1_sep16_scaffold_5075_5

Not on your lists

3956..4315
DNA (360bp) protein (120aa)
Binding-protein-dependent transport systems inner membrane component Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U0W4_9CHLR
Marine sediment metagenome DNA, contig: S01H1_S04375 {ECO:0000313|EMBL:GAF87779.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
binding-protein-dependent transport system inner membrane protein
PLM3-1_170_b1_sep16_scaffold_5075_6
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

4321..5496
DNA (1176bp) protein (392aa)
Putative ABC transporter ATP-binding protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I4X6_CALAS
putative ABC transporter ATP-binding protein
Tax=CG_Anaero_02
PLM3-1_170_b1_sep16_scaffold_5075_7
unknown

Not on your lists

comp(5513..5806)
DNA (294bp) protein (98aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_5075_8
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

6256..6483
DNA (228bp) protein (76aa)
Putative uncharacterized protein Tax=Frankia sp. EUN1f RepID=D3D5M6_9ACTO bin=RBG2 species=Frankia sp. EUN1f genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG2 organism_group=Chloroflexi
Uncharacterized protein {ECO:0000313|EMBL:KDA53399.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_5075_9

Not on your lists

6840..7418
DNA (579bp) protein (193aa)
GTP cyclohydrolase (EC:3.5.4.16); K01495 GTP cyclohydrolase I [EC:3.5.4.16] bin=RBG_19FT_COMBO_GAL15_69_19 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
GTP cyclohydrolase I (EC:3.5.4.16)
Marine sediment metagenome DNA, contig: S01H1_L04334 {ECO:0000313|EMBL:GAF83871.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b1_sep16_scaffold_5075_10

Not on your lists

7524..8201
DNA (678bp) protein (226aa)
Glycosyl transferase group 1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TL97_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:KKK97202.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
group 1 glycosyl transferase
PLM3-1_170_b1_sep16_scaffold_5075_11

Not on your lists

8161..8730
DNA (570bp) protein (190aa)
Glycosyl transferase group 1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AXS3_HERA2
Uncharacterized protein {ECO:0000313|EMBL:KKL52569.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
group 1 glycosyl transferase
PLM3-1_170_b1_sep16_scaffold_5075_12

Not on your lists

8900..9490
DNA (591bp) protein (197aa)
LmbE family protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7T5_SPHTD
Uncharacterized protein {ECO:0000313|EMBL:KKL52568.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
LmbE family protein
PLM3-1_170_b1_sep16_scaffold_5075_13

Not on your lists

9490..10440
DNA (951bp) protein (317aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL18413.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
cytochrome C biogenesis protein CcsB bin=bin8_Chloro species=Kineosphaera limosa genus=Kineosphaera taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
cytochrome C biogenesis protein CcsB
PLM3-1_170_b1_sep16_scaffold_5075_14
unknown

Not on your lists

10479..10688
DNA (210bp) protein (70aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_5075_15

Not on your lists


11264..11686
DNA (423bp) protein (141aa)
30S ribosomal protein S12 Tax=Chloroflexus RepID=A9WH60_CHLAA
Uncharacterized protein {ECO:0000313|EMBL:KKL18412.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rpsL; 30S ribosomal protein S12
PLM3-1_170_b1_sep16_scaffold_5075_16

Not on your lists


11704..12174
DNA (471bp) protein (157aa)
30S ribosomal protein S7 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C2K1_SPHTD
Uncharacterized protein {ECO:0000313|EMBL:KKL52167.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
30S ribosomal protein S7
PLM3-1_170_b1_sep16_scaffold_5075_17

Not on your lists

12225..14321
DNA (2097bp) protein (699aa)
Elongation factor G Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R8J3_AMMDK
Uncharacterized protein {ECO:0000313|EMBL:KKL97710.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
translation elongation factor G
PLM3-1_170_b1_sep16_scaffold_5075_18
RBG_13_Chloroflexi_54_9_curated, Chloroflexi, Bacteria

Not on your lists


14361..14669
DNA (309bp) protein (103aa)
30S ribosomal protein S10 bin=GWC2_Chloroflexi_73_18 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
rpsJ; 30S ribosomal protein S10
Tax=RBG_13_Chloroflexi_54_9_curated
Displaying 18 items

View Taxonomy