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PLM3-1_170_b2_sep16_scaffold_2321

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_2321_1
unknown

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comp(159..548)
DNA (390bp) protein (130aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2321_2
Candidatus Nitrosopumilus koreensis, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(730..1293)
DNA (564bp) protein (188aa)
TATA-box-binding protein Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B5P3_9ARCH
TATA-box binding family protein
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA-box factor {ECO:0000256|HAMAP-Rule:MF_00408}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus koreensis AR1.;"
PLM3-1_170_b2_sep16_scaffold_2321_3
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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1546..2736
DNA (1191bp) protein (397aa)
Uncharacterized protein Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CU52_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:EGP94253.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_2321_4

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2733..3557
DNA (825bp) protein (275aa)
Uncharacterized protein Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B5H3_9ARCH
Transglutaminase-like superfamily protein {ECO:0000313|EMBL:KFM21511.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-B03.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_2321_5
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(3547..3735)
DNA (189bp) protein (63aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6AU48_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI06060.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_2321_trna_1
unknown

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comp(4011..4094)
DNA (84bp)
transferRNA Ser
PLM3-1_170_b2_sep16_scaffold_2321_6

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comp(4133..4879)
DNA (747bp) protein (249aa)
Metallophosphoesterase Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BAT1_9ARCH
calcineurin-like phosphoesterase family protein
Metallophosphoesterase {ECO:0000313|EMBL:AIE97923.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_03_D08.;"
PLM3-1_170_b2_sep16_scaffold_2321_7

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5009..6046
DNA (1038bp) protein (346aa)
Isocitrate/isopropylmalate dehydrogenase (IDH1, IDH2, icd) {ECO:0000313|EMBL:AIF04584.1}; EC=1.1.1.42 {ECO:0000313|EMBL:AIF04584.1};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_175_E04.;"
isocitrate/isopropylmalate dehydrogenase (EC:1.1.1.42)
isocitrate dehydrogenase Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI00035C2D7B
PLM3-1_170_b2_sep16_scaffold_2321_8

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comp(6047..6580)
DNA (534bp) protein (178aa)
Trans-aconitate 2-methyltransferase protein {ECO:0000313|EMBL:KER06337.1}; EC=2.1.1.144 {ECO:0000313|EMBL:KER06337.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-E16.;"
Putative methylase Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A2N7_NITMS
methylase
PLM3-1_170_b2_sep16_scaffold_2321_9
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(6555..7262)
DNA (708bp) protein (236aa)
ribosomal RNA adenine methylase transferase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Ribosomal RNA adenine methylase transferase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_2321_10
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(7259..7819)
DNA (561bp) protein (187aa)
RNA-binding protein Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CU69_9ARCH
RNA-binding protein {ECO:0000313|EMBL:EGP94270.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_2321_11
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(7839..8165)
DNA (327bp) protein (109aa)
RNA polymerase Rpb4 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
RNA polymerase Rpb4
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_2321_12
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(8168..8467)
DNA (300bp) protein (100aa)
ribosomal protein L21E; K02889 large subunit ribosomal protein L21e bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
rpl21e; 50S ribosomal protein L21e
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_2321_13

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comp(8554..9591)
DNA (1038bp) protein (346aa)
Putative DNA repair and recombination protein radA Tax=Thaumarchaeota archaeon N4 RepID=V6AU25_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKL94066.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
radA; DNA repair and recombination protein RadA
PLM3-1_170_b2_sep16_scaffold_2321_14
unknown

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9668..9883
DNA (216bp) protein (72aa)

This feature has no annotations

Displaying 15 items

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