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PLM3-1_170_b2_sep16_scaffold_65

Search features with annotation key words

Displaying items 1-30 of 188 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_65_1
unknown

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comp(1..207)
DNA (207bp) protein (69aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_65_2
unknown

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comp(377..574)
DNA (198bp) protein (66aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_65_3

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comp(837..1019)
DNA (183bp) protein (61aa)
Putative ribosomal protein S30 Tax=uncultured marine crenarchaeote HF4000_ANIW133O4 RepID=B3T4B4_9ARCH
Ribosomal protein S30 (RP-S30e, RPS30) {ECO:0000313|EMBL:AIE98404.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_05_G02.;"
ribosomal protein S30
PLM3-1_170_b2_sep16_scaffold_65_4
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(1063..2799)
DNA (1737bp) protein (579aa)
Radical SAM domain protein Tax=Thaumarchaeota archaeon N4 RepID=V6AUD4_9ARCH
Radical SAM domain protein {ECO:0000313|EMBL:CDI06088.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
Radical SAM protein
PLM3-1_170_b2_sep16_scaffold_65_5

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comp(2851..3663)
DNA (813bp) protein (271aa)
Oxidoreductase FAD/NAD(P)-binding subunit Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BCW6_9ARCH
Oxidoreductase domain-containing protein (PyrDII) {ECO:0000313|EMBL:AIF07353.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_201_H03.;"
pyrK; putative dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit
PLM3-1_170_b2_sep16_scaffold_65_6
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(3647..4555)
DNA (909bp) protein (303aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
Dihydroorotate dehydrogenase Tax=Thaumarchaeota archaeon N4 RepID=V6AU69_9ARCH
dihydroorotate dehydrogenase family protein
PLM3-1_170_b2_sep16_scaffold_65_7
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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4653..5915
DNA (1263bp) protein (421aa)
Putative pre-mRNA processing ribonucleoprotein, binding domain protein Tax=Thaumarchaeota archaeon N4 RepID=V6ATP9_9ARCH
Putative pre-mRNA processing ribonucleoprotein, binding domain protein {ECO:0000313|EMBL:CDI06091.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
snoRNA-binding domain protein
PLM3-1_170_b2_sep16_scaffold_65_8
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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5896..6564
DNA (669bp) protein (223aa)
fibrillarin (EC:2.7.11.1); K04795 fibrillarin-like pre-rRNA processing protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
flpA; Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase (EC:2.1.1.-)
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_9
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(6569..7189)
DNA (621bp) protein (207aa)
ribonuclease HII (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ribonuclease HII (EC:3.1.26.4)
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_10
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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7267..8400
DNA (1134bp) protein (378aa)
tRNA (guanine-N(2)-)-methyltransferase (EC:2.1.1.32); K00555 tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase [EC:2.1.1.215 2.1.1.216] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
N2,N2-dimethylguanosine tRNA methyltransferase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_11

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comp(8397..8990)
DNA (594bp) protein (198aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-P11.;"
rlmE; Ribosomal RNA large subunit methyltransferase E (EC:2.1.1.166)
Ribosomal RNA large subunit methyltransferase E Tax=Nitrosopumilus maritimus (strain SCM1) RepID=RLME_NITMS
PLM3-1_170_b2_sep16_scaffold_65_12

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comp(8987..9568)
DNA (582bp) protein (194aa)
Transcriptional regulator Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CU84_9ARCH
Transcriptional regulator protein {ECO:0000313|EMBL:KFM15454.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-D11.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_65_13
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(9630..10109)
DNA (480bp) protein (160aa)
Uncharacterized protein Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2EMJ0_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:EPA05747.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia BG20.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_65_14
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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10223..12304
DNA (2082bp) protein (694aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_15
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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12410..14557
DNA (2148bp) protein (716aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
conserved exported protein of unknown function
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_16
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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14626..14925
DNA (300bp) protein (100aa)
Putative nucleic acid binding OB-fold tRNA/helicase-type Tax=Candidatus Nitrososphaera gargensis RepID=K0IH57_NITGG
OB-fold nucleic acid binding protein
OB-fold nucleic acid binding protein {ECO:0000313|EMBL:AIF84181.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_65_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(14948..15724)
DNA (777bp) protein (259aa)
Putative 3-isopropylmalate dehydratase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INE0_NITGG
3-isopropylmalate dehydratase
Putative 3-isopropylmalate dehydratase {ECO:0000313|EMBL:AFU59209.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_65_18
Marine Group I thaumarchaeote SCGC RSA3, Thaumarchaeota, Archaea

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comp(15769..16587)
DNA (819bp) protein (273aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6AQK4_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KFM18587.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC RSA3.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_65_19
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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16749..17060
DNA (312bp) protein (104aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_20
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(17049..17663)
DNA (615bp) protein (205aa)
PA-phosphatase like phosphoesterase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
PA-phosphatase like phosphoesterase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_21
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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18080..19288
DNA (1209bp) protein (403aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CVC4_9ARCH
PLM3-1_170_b2_sep16_scaffold_65_22

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comp(19281..19616)
DNA (336bp) protein (112aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Uncharacterized protein {ECO:0000313|EMBL:AIF16702.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_74_G04.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_65_23
uncultured crenarchaeote 29d5, Crenarchaeota, Archaea

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comp(19618..20058)
DNA (441bp) protein (147aa)
NifU family SUF system FeS assembly protein Tax=uncultured crenarchaeote 29d5 RepID=D4N6Y3_9CREN
NifU family SUF system FeS assembly protein {ECO:0000313|EMBL:ACY24469.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote 29d5.;"
nifU; SUF system FeS cluster assembly protein
PLM3-1_170_b2_sep16_scaffold_65_24
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(20055..21299)
DNA (1245bp) protein (415aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
sufS; selenocysteine lyase, PLP-dependent (EC:4.4.1.16)
Cysteine desulfurase Tax=Thaumarchaeota archaeon N4 RepID=V6AQH5_9ARCH
PLM3-1_170_b2_sep16_scaffold_65_25
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(21303..21623)
DNA (321bp) protein (107aa)
dioxygenase ferredoxin protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Dioxygenase ferredoxin protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_26
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(21620..23020)
DNA (1401bp) protein (467aa)
FeS assembly protein SufD bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
FeS assembly protein SufD
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_27
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(23047..24447)
DNA (1401bp) protein (467aa)
FeS assembly protein SufB bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
FeS assembly protein SufB
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_28
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(24534..25331)
DNA (798bp) protein (266aa)
uroporphyrinogen III synthase HEM4 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
uroporphyrinogen III synthase HEM4
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_65_29
Candidatus Nitrosopumilus koreensis, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(25328..26071)
DNA (744bp) protein (248aa)
Uroporphyrin-III C-methyltransferase Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0B4R9_9ARCH
uroporphyrin-III C-methyltransferase
Uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:AFS80404.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus koreensis AR1.;"
PLM3-1_170_b2_sep16_scaffold_65_30
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(26068..26199)
DNA (132bp) protein (44aa)
hemC; putative porphobilinogen deaminase (EC:2.5.1.61)
Probable porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
porphobilinogen deaminase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Displaying items 1-30 of 188 in total

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