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PLM3-1_170_b2_sep16_scaffold_4208

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_4208_1
unknown

Not on your lists

comp(1..111)
DNA (111bp) protein (37aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_4208_2

Not on your lists

comp(190..1986)
DNA (1797bp) protein (599aa)
Uncharacterized protein Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B4J4_HERA2
Uncharacterized protein {ECO:0000313|EMBL:KKK50329.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_4208_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

2652..3689
DNA (1038bp) protein (346aa)
Pectinesterase Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5B676_9MICO bin=16ft_combo_ws3_JS1 species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
fibronectin I domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_4208_4
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3790..5316
DNA (1527bp) protein (509aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6B8W0_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAO34857.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_4208_5
RIFOXYD2_FULL_Elusimicrobia_34_15_curated, Elusimicrobia, Bacteria

Not on your lists

5594..6484
DNA (891bp) protein (297aa)
glycohydrolase (EC:3.2.1.91)
Fibronectin type III domain protein bin=GWA2_Elusimicrobia_69_24 species=Leptospira meyeri genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
Tax=RIFOXYD2_FULL_Elusimicrobia_34_15_curated
PLM3-1_170_b2_sep16_scaffold_4208_6
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

Not on your lists

6474..7454
DNA (981bp) protein (327aa)
Uncharacterized protein bin=GWA2_Elusimicrobia_69_24 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
Tax=RBG_16_Caldithrix_48_16_curated
PLM3-1_170_b2_sep16_scaffold_4208_7
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7590..8516
DNA (927bp) protein (309aa)
Polysaccharide deactylase family protein, PEP-CTERM locus subfamily Tax=Geobacter sp. (strain M18) RepID=E8WSZ8_GEOS8
polysaccharide deactylase family protein
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
PLM3-1_170_b2_sep16_scaffold_4208_8
unknown

Not on your lists

8513..9982
DNA (1470bp) protein (490aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_4208_9
Geobacter sp. M21, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10175..10942
DNA (768bp) protein (256aa)
Uncharacterized protein Tax=Geobacter sp. (strain M21) RepID=C6E4A8_GEOSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT17406.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M21).;"
PLM3-1_170_b2_sep16_scaffold_4208_10
unknown

Not on your lists

11050..12180
DNA (1131bp) protein (377aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_4208_11
RIFOXYD2_FULL_Elusimicrobia_34_15_curated, Elusimicrobia, Bacteria

Not on your lists

12639..13859
DNA (1221bp) protein (407aa)
hypothetical protein Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B5E533
translation initiation factor IF-2
Tax=RIFOXYD2_FULL_Elusimicrobia_34_15_curated
PLM3-1_170_b2_sep16_scaffold_4208_12
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

Not on your lists

14174..14923
DNA (750bp) protein (250aa)
undecaprenyl-phosphate galactose phosphotransferase (EC:2.7.8.6)
sugar transferase Tax=Schlesneria paludicola RepID=UPI00029A7489
Tax=RBG_16_Zixibacteria_50_21_curated
PLM3-1_170_b2_sep16_scaffold_4208_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

15120..16871
DNA (1752bp) protein (584aa)
Signal transduction histidine kinase, nitrogen specific, NtrB Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RCT9_DESPD bin=16ft_combo_ws3_JS1 species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
signal transduction histidine kinase, nitrogen specific, NtrB
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_4208_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

16973..18166
DNA (1194bp) protein (398aa)
Sigma-54-dependent transcriptional response regulator Tax=Geobacter RepID=Q39Y76_GEOMG bin=16ft_combo_ws3_JS1 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
sigma-54-dependent transcriptional response regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_4208_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

18195..18671
DNA (477bp) protein (159aa)
Uncharacterized protein Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AH69_IGNAJ bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_4208_16
unknown

Not on your lists

18665..19630
DNA (966bp) protein (322aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_4208_17
CG_Omnitr_07, Omnitrophica, Bacteria

Not on your lists


19617..21701
DNA (2085bp) protein (695aa)
leuS; leucyl-tRNA ligase LeuS (EC:6.1.1.4)
Leucine--tRNA ligase Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LHJ2_THEPS
Tax=CG_Omnitr_07
Displaying 17 items

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