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PLM3-1_170_b2_sep16_scaffold_3905

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_3905_1
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

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120..2399
DNA (2280bp) protein (760aa)
Subtilisin-like serine protease bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
subtilisin-like serine protease
Tax=RBG_16_Zixibacteria_43_9_curated
PLM3-1_170_b2_sep16_scaffold_3905_2
unknown

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comp(2452..2577)
DNA (126bp) protein (42aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_3905_3
GWF2_OD1_41_16, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

2688..3146
DNA (459bp) protein (153aa)
Transcriptional regulator {ECO:0000313|EMBL:KKR95642.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWF2_41_16.;"
Probable transcriptional regulatory protein NPH_1078 bin=GWD2_Nitrospirae-related_57_8 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_3905_4
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3253..3702
DNA (450bp) protein (150aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
Crossover junction endodeoxyribonuclease RuvC Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9Z0_PHEZH
ruvC; Holliday junction resolvase
PLM3-1_170_b2_sep16_scaffold_3905_5
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

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3699..4307
DNA (609bp) protein (203aa)
Holliday junction ATP-dependent DNA helicase RuvA bin=GWA2_Ignavibacteria_55_11 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
Holliday junction DNA helicase RuvA
Tax=RBG_13_Caldithrix_44_9_curated
PLM3-1_170_b2_sep16_scaffold_3905_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4347..5597
DNA (1251bp) protein (417aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.6.4.12)
Holliday junction ATP-dependent DNA helicase RuvB Tax=Caldithrix abyssi DSM 13497 RepID=H1XP86_9BACT bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_3905_7
CG_Delta_03, Deltaproteobacteria, Proteobacteria, Bacteria

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5539..6531
DNA (993bp) protein (331aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase Tax=Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) RepID=F0S207_DESTD
S-adenosylmethionine:tRNAribosyltransferase-isomerase
Tax=CG_Delta_03
PLM3-1_170_b2_sep16_scaffold_3905_8
unknown

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6865..7020
DNA (156bp) protein (52aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_3905_9
Octadecabacter arcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7036..7347
DNA (312bp) protein (104aa)
Flagellar motor switch protein Tax=Octadecabacter arcticus 238 RepID=M9RSM0_9RHOB
fliN; flagellar motor switch protein
Flagellar motor switch protein {ECO:0000313|EMBL:AGI74743.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Octadecabacter.;" source="Octadecabacter arcticus 238.;"
PLM3-1_170_b2_sep16_scaffold_3905_10
unknown

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7344..7703
DNA (360bp) protein (120aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_3905_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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7890..8822
DNA (933bp) protein (311aa)
Site-determining protein Tax=Thermincola potens (strain JR) RepID=D5XFF2_THEPJ bin=16ft_combo_ws3_JS1 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Cobyrinic acid ac-diamide synthase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_3905_12
unknown

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8825..9067
DNA (243bp) protein (81aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_3905_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

9086..9856
DNA (771bp) protein (257aa)
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG Tax=Magnetococcus sp. (strain MC-1) RepID=A0LC35_MAGSM bin=16ft_combo_ws3_JS1 species=unknown genus=Magnetococcus taxon_order=Magnetococcales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
FliA/WhiG subfamily RNA polymerase sigma-28 subunit
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_3905_14
Syntrophomonas wolfei, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

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9862..10743
DNA (882bp) protein (294aa)
Putative signal transduction protein Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AX44_SYNWW
signal transduction protein
Putative signal transduction protein {ECO:0000313|EMBL:ABI68710.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen).;"
PLM3-1_170_b2_sep16_scaffold_3905_15
unknown

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10749..11138
DNA (390bp) protein (130aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_3905_16

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11135..12331
DNA (1197bp) protein (399aa)
Marine sediment metagenome DNA, contig: S01H4_C00100 {ECO:0000313|EMBL:GAG64369.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
multi-sensor signal transduction histidine kinase bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
GAF sensor-containing diguanylate cyclase
PLM3-1_170_b2_sep16_scaffold_3905_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

12331..13992
DNA (1662bp) protein (554aa)
GAF sensor signal transduction histidine kinase (EC:2.7.13.3) bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
multi-sensor signal transduction histidine kinase (EC:2.7.13.3)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_3905_18
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

comp(13989..14567)
DNA (579bp) protein (193aa)
Putative uncharacterized protein bin=GWA2_Elusimicrobia_69_24 species=Chlorobium phaeobacteroides genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
Tax=GWA2_Elusimicrobia_69_24_curated
PLM3-1_170_b2_sep16_scaffold_3905_19
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14896..16011
DNA (1116bp) protein (372aa)
UDP-N-acetylglucosamine 2-epimerase Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CQ38_DESK7
UDP-N-acetylglucosamine 2-epimerase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
PLM3-1_170_b2_sep16_scaffold_3905_20
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16027..16911)
DNA (885bp) protein (295aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
Cysteine synthase Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NYS5_GRAMM
cysteine synthase
PLM3-1_170_b2_sep16_scaffold_3905_21
RBG_13_RIF08_66_14_curated, RIF8, Bacteria

Not on your lists

comp(16989..17780)
DNA (792bp) protein (264aa)
Tax=RBG_13_RIF08_66_14_curated
PLM3-1_170_b2_sep16_scaffold_3905_22
Syntrophaceticus schinkii, Syntrophaceticus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17786..18667)
DNA (882bp) protein (294aa)
Spore coat polysaccharide biosynthesis protein SpsC Tax=Bacillus subtilis RepID=SPSC_BACSU
Uncharacterized protein {ECO:0000313|EMBL:CEO87735.1}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Syntrophaceticus.;" source="Syntrophaceticus schinkii.;"
spsC; glutamine-dependent sugar transaminase
Displaying 22 items

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