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PLM3-1_170_b2_sep16_scaffold_3918

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_3918_1
unknown

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comp(3..287)
DNA (285bp) protein (95aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_3918_2
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(284..1513)
DNA (1230bp) protein (410aa)
Conserved uncharacterized protein Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FQZ3_STIAD
hypothetical protein
Conserved uncharacterized protein {ECO:0000313|EMBL:ADO72026.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
PLM3-1_170_b2_sep16_scaffold_3918_3
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(1510..2784)
DNA (1275bp) protein (425aa)
Glycine C-acetyltransferase {ECO:0000313|EMBL:AEU36928.1}; EC=2.3.1.29 {ECO:0000313|EMBL:AEU36928.1};; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000381A453
Glycine C-acetyltransferase
PLM3-1_170_b2_sep16_scaffold_3918_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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3255..3845
DNA (591bp) protein (197aa)
GMP synthase-Glutamine amidotransferase domain (EC:6.3.5.2)
GMP synthase-Glutamine amidotransferase domain Tax=Chthonomonas calidirosea T49 RepID=S0EWL3_9BACT
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_3918_5
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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3853..4755
DNA (903bp) protein (301aa)
Methyltransferase FkbM family Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R241_ISOPI
FkbM family methyltransferase
Tax=RBG_16_Gamma2_60_9_curated
PLM3-1_170_b2_sep16_scaffold_3918_6
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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4859..7048
DNA (2190bp) protein (730aa)
protein kinase/LuxR family transcriptional regulator (EC:2.7.11.1)
hypothetical protein Tax=Mycobacterium sp. 141 RepID=UPI00037E441F
Protein kinase/ LuxR family transcriptional regulator {ECO:0000313|EMBL:EKT79083.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus M213.;"
PLM3-1_170_b2_sep16_scaffold_3918_7
RLO_PLX_64_10, Bacteria

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7125..7874
DNA (750bp) protein (250aa)
Non-specific serine/threonine protein kinase Tax=uncultured candidate division OP1 bacterium RepID=H5SSR1_9BACT
ATPase-like protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b2_sep16_scaffold_3918_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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8244..9551
DNA (1308bp) protein (436aa)
Citrate synthase Tax=Leptonema illini DSM 21528 RepID=H2CC72_9LEPT bin=16ft_combo_ws3_JS1 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
type II citrate synthase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_3918_9
RBG_13_Chloroflexi_54_8_curated, Chloroflexi, Bacteria

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comp(9576..10148)
DNA (573bp) protein (191aa)
Uncharacterized protein Tax=Rubidibacter lacunae KORDI 51-2 RepID=U5D8C8_9CHRO
hypothetical protein
Tax=RBG_13_Chloroflexi_54_8_curated
PLM3-1_170_b2_sep16_scaffold_3918_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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10354..10833
DNA (480bp) protein (160aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_3918_11
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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10857..12095
DNA (1239bp) protein (413aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54123.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Sodium/sulphate symporter bin=GWC2_Deltaproteobacteria_56_8 species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_3918_12
unknown

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12089..12511
DNA (423bp) protein (141aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_3918_13
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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comp(12508..13209)
DNA (702bp) protein (234aa)
CarD family transcriptional regulator bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
CarD family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b2_sep16_scaffold_3918_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

13424..13963
DNA (540bp) protein (180aa)
alias=16ft_combo_ws3_scaffold_2287_2 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_3918_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

13960..14421
DNA (462bp) protein (154aa)
Cytochrome c, mono-and diheme variant Tax=Cesiribacter andamanensis AMV16 RepID=M7N3Z0_9BACT bin=16ft_combo_ws3_JS1 species=Cesiribacter andamanensis genus=Cesiribacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
cytochrome C
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_3918_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

14456..15418
DNA (963bp) protein (321aa)
nitrous-oxide reductase (EC:1.7.2.4); K00376 nitrous-oxide reductase [EC:1.7.2.4] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
nitrous-oxide reductase (EC:1.7.2.4)
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 16 items

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