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PLM3-1_170_b2_sep16_scaffold_2305

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_2305_1
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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2..313
DNA (312bp) protein (104aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
Tryptophan synthase alpha chain Tax=Micromonospora sp. ATCC 39149 RepID=C4RLD5_9ACTO
tryptophan synthase subunit alpha
PLM3-1_170_b2_sep16_scaffold_2305_2
halophilic archaeon J07HX5, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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310..1137
DNA (828bp) protein (276aa)
ubiA; prenyltransferase (EC:2.5.1.-)
UbiA prenyltransferase Tax=halophilic archaeon J07HX5 RepID=U1MZ17_9EURY
UbiA prenyltransferase {ECO:0000313|EMBL:ERG89410.1}; species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX5.;"
PLM3-1_170_b2_sep16_scaffold_2305_3
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1183..2178)
DNA (996bp) protein (332aa)
Serine/threonine protein kinase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LVZ4_HALO1
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:ACY14128.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM3-1_170_b2_sep16_scaffold_2305_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2420..2668
DNA (249bp) protein (83aa)
Carbon storage regulator homolog Tax=delta proteobacterium MLMS-1 RepID=Q1NP56_9DELT bin=16ft_combo_ws3_JS1 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
csrA1; carbon storage regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_2305_5
unknown

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2665..3027
DNA (363bp) protein (121aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2305_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3424..4485
DNA (1062bp) protein (354aa)
Signal transduction histidine kinase, nitrogen specific, NtrB Tax=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) RepID=B8DL77_DESVM bin=16ft_combo_ws3_JS1 species=Desulfovibrio vulgaris genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
signal transduction histidine kinase, nitrogen specific, NtrB
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_2305_7
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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4513..5934
DNA (1422bp) protein (474aa)
Two component, sigma54 specific, transcriptional regulator, Fis family bin=GWC2_CP_Nitrospirae-rel_42_7 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Fis family transcriptional regulator
Tax=GWD2_Desulfuromonadales_61_12_curated
PLM3-1_170_b2_sep16_scaffold_2305_8
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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5979..7070
DNA (1092bp) protein (364aa)
tgt; tRNA-guanine transglycosylase (queuine/archaeosine tRNA-ribosyltransferase) (EC:2.4.2.29) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
queuine tRNA-ribosyltransferase
Tax=RBG_13_Deltaproteobacteria_61_14_curated
PLM3-1_170_b2_sep16_scaffold_2305_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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7101..7427
DNA (327bp) protein (109aa)
yajC; Preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC bin=bin7_NC10_sister species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=bin7_NC10_sister organism_group=NC10
preprotein translocase subunit YajC
Tax=CSP1_6_Rokubacteria
PLM3-1_170_b2_sep16_scaffold_2305_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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7420..7968
DNA (549bp) protein (183aa)
Peptide deformylase bin=GWF2_Methylomirabilis_70_14 species=Alkalilimnicola ehrlichii genus=Alkalilimnicola taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide deformylase
Tax=GWA2_Rokubacteria_70_23_curated
PLM3-1_170_b2_sep16_scaffold_2305_11
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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7977..8621
DNA (645bp) protein (215aa)
Peptide deformylase Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SJA4_THEM7
methionyl-tRNA formyltransferase
Peptide deformylase {ECO:0000256|RuleBase:RU003335}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
PLM3-1_170_b2_sep16_scaffold_2305_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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9128..10162
DNA (1035bp) protein (345aa)
N utilization substance protein B; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
N utilization substance protein B
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_2305_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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10159..11073
DNA (915bp) protein (305aa)
PASTA domain-containing protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
putative serine/threonine protein kinase with PASTA sensor
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_2305_14
GWD2_Elusimicrobia_63_28_curated, Elusimicrobia, Bacteria

Not on your lists

11229..11783
DNA (555bp) protein (185aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase bin=GWC2_Elusimicrobia_64_44 species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good
Tax=GWD2_Elusimicrobia_63_28_curated
PLM3-1_170_b2_sep16_scaffold_2305_15
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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11780..12760
DNA (981bp) protein (327aa)
UDP-glucose 4-epimerase bin=GWC2_Chloroflexi_73_18 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
UDP-glucose 4-epimerase
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3-1_170_b2_sep16_scaffold_2305_16
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

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12757..13101
DNA (345bp) protein (115aa)
hypothetical protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
Tax=RIFOXYC12_FULL_TA06_54_24_curated
PLM3-1_170_b2_sep16_scaffold_2305_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

13098..14135
DNA (1038bp) protein (346aa)
rfaEa; d-beta-d-heptose 7-phosphate kinase (EC:2.7.1.-)
RfaE bifunctional protein, domain I Tax=uncultured Acidobacteria bacterium RepID=H5SIS9_9BACT bin=16ft_combo_ws3_JS1 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_2305_18
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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14128..14598
DNA (471bp) protein (157aa)
D-alpha,beta-D-heptose 7-phosphate 1-kinase (EC:2.7.1.- 2.7.7.-)
Bifunctional protein HldE Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R1C2_ISOPI
Bifunctional protein HldE {ECO:0000256|HAMAP-Rule:MF_01603, ECO:0000256|SAAS:SAAS00015122}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
PLM3-1_170_b2_sep16_scaffold_2305_19
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(14627..15850)
DNA (1224bp) protein (408aa)
Multidrug ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDA53220.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_2305_20
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(15858..17159)
DNA (1302bp) protein (434aa)
Efflux transporter, RND family, MFP subunit Tax=Geobacter sp. (strain M18) RepID=E8WJJ6_GEOS8
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ADW13506.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
PLM3-1_170_b2_sep16_scaffold_2305_21
Pyrococcus sp. NA2, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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17358..18857
DNA (1500bp) protein (500aa)
Uncharacterized protein Tax=Pyrococcus sp. (strain NA2) RepID=F4HNL6_PYRSN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEC52160.1}; species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus sp. (strain NA2).;"
PLM3-1_170_b2_sep16_scaffold_2305_22
unknown

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18854..18916
DNA (63bp) protein (21aa)

This feature has no annotations

Displaying 22 items

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