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PLM3-1_170_b2_sep16_scaffold_323

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_323_1
RBG_16_Zixibacteria_40_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(170..787)
DNA (618bp) protein (206aa)
outer membrane protein, OmpH family bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Fibrobacter succinogenes genus=Fibrobacter taxon_order=Fibrobacterales taxon_class=Fibrobacteria phylum=Fibrobacteres tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Outer membrane protein H precursor
Tax=RBG_16_Zixibacteria_40_9_curated
PLM3-1_170_b2_sep16_scaffold_323_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(804..3233)
DNA (2430bp) protein (810aa)
ATPase AAA; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
outer membrane protein assembly complex, YaeT protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_323_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3317..5734)
DNA (2418bp) protein (806aa)
ATPase AAA-2 domain protein Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CMF9_DESK7 bin=16ft_combo_ws3_JS1 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ATPase AAA
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_323_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5776..6861)
DNA (1086bp) protein (362aa)
Putative ATP:guanido phosphotransferase DESHY_150004 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8EGH0_9FIRM bin=16ft_combo_ws3_JS1 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_323_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6861..7409)
DNA (549bp) protein (183aa)
ABC transporter; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_323_6
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7433..8137)
DNA (705bp) protein (235aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708, ECO:0000256|SAAS:SAAS00041694}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708, ECO:0000256|SAAS:SAAS00041671};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
Lipoprotein releasing system, ATP-binding protein Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WT04_PSEUU
lipoprotein releasing system, ATP-binding protein
PLM3-1_170_b2_sep16_scaffold_323_7
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

Not on your lists

comp(8130..9353)
DNA (1224bp) protein (408aa)
LolC/E family lipoprotein releasing system, transmembrane protein; K09808 lipoprotein-releasing system permease protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
lipoprotein releasing system transmembrane protein LolC/E family
Tax=RIFOXYC12_FULL_TA06_54_24_curated
PLM3-1_170_b2_sep16_scaffold_323_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9391..10854)
DNA (1464bp) protein (488aa)
lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase Tax=Moorella thermoacetica (strain ATCC 39073) RepID=SYK_MOOTA bin=16ft_combo_ws3_JS1 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_323_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10952..12955)
DNA (2004bp) protein (668aa)
General secretory pathway protein E Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQ24_9FIRM bin=16ft_combo_ws3_JS1 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tfp pilus assembly protein PilB
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_323_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(13175..14647)
DNA (1473bp) protein (491aa)
Amidophosphoribosyltransferase Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E710_GEOLS bin=16ft_combo_ws3_JS1 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
amidophosphoribosyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3-1_170_b2_sep16_scaffold_323_11
unknown

Not on your lists

comp(14668..15267)
DNA (600bp) protein (200aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_323_12
RBG_13_RIF08_66_14_curated, RIF8, Bacteria

Not on your lists

comp(15264..16106)
DNA (843bp) protein (281aa)
Phosphoribosylformylglycinamidine synthase 1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BUN0_METCG bin=16ft_combo_ws3_JS1 species=Methanosaeta concilii genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Phosphoribosylformylglycinamidine synthase I
Tax=RBG_13_RIF08_66_14_curated
PLM3-1_170_b2_sep16_scaffold_323_13
Methanosaeta harundinacea, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(16109..18472)
DNA (2364bp) protein (788aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formylglycinamide ribonucleotide amidotransferase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; Glutamine amidotransferase PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Phosphoribosylformylglycinamidine synthase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta harundinacea (strain 6Ac).;"
Phosphoribosylformylglycinamidine synthase 2 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WP93_METH6
Phosphoribosylformylglycinamidine synthase II
PLM3-1_170_b2_sep16_scaffold_323_14
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(18456..19769)
DNA (1314bp) protein (438aa)
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase bin=GWC2_Methylomirabilis_70_16 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM3-1_170_b2_sep16_scaffold_323_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(19774..21015)
DNA (1242bp) protein (414aa)
Peptidase S1 and S6 chymotrypsin/Hap Tax=Caldithrix abyssi DSM 13497 RepID=H1XQQ5_9BACT bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
2-alkenal reductase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_323_16
RLO_PLX_64_10, Bacteria

Not on your lists

comp(21002..21793)
DNA (792bp) protein (264aa)
tRNA pseudouridine synthase A Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MFA8_RHOM4
tRNA pseudouridine synthase A
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b2_sep16_scaffold_323_17
unknown

Not on your lists

comp(21783..22466)
DNA (684bp) protein (228aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_323_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(22658..23680)
DNA (1023bp) protein (341aa)
Apolipoprotein N-acyltransferase Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AQM5_PELPD bin=16ft_combo_ws3_JS1 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
lnt-1; apolipoprotein N-acyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_323_19
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(24244..25254)
DNA (1011bp) protein (337aa)
Oxidoreductase Tax=Brevibacillus agri BAB-2500 RepID=L5MU83_9BACL
oxidoreductase
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM3-1_170_b2_sep16_scaffold_323_20
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25331..26359)
DNA (1029bp) protein (343aa)
protein kinase (EC:2.7.11.1)
Fis family transcriptional regulator Tax=Sorangium cellulosum So0157-2 RepID=S4XKP4_SORCE
Fis family transcriptional regulator {ECO:0000313|EMBL:AGP32360.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
PLM3-1_170_b2_sep16_scaffold_323_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(26396..27418)
DNA (1023bp) protein (341aa)
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3-1_170_b2_sep16_scaffold_323_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(27415..28731)
DNA (1317bp) protein (439aa)
Metal dependent phosphohydrolase Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A735_NATTJ bin=16ft_combo_ws3_JS1 species=Natranaerobius thermophilus genus=Natranaerobius taxon_order=Natranaerobiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
metal dependent phosphohydrolase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_323_23
R_Elusimicrobia_64_13, Elusimicrobia, Bacteria

Not on your lists

comp(28937..29866)
DNA (930bp) protein (310aa)
Carbohydrate kinase, PfkB family Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08PH4_STIAD
Kinase, PfkB family
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_64_13_curated
PLM3-1_170_b2_sep16_scaffold_323_24
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists


comp(29869..31548)
DNA (1680bp) protein (560aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
arginyl-tRNA synthetase (EC:6.1.1.19)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3-1_170_b2_sep16_scaffold_323_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(31520..31888)
DNA (369bp) protein (123aa)
Ribosomal silencing factor RsfS Tax=Rhodothermus marinus RepID=D0MDZ8_RHOM4 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
iojap-like protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_323_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(31885..32904)
DNA (1020bp) protein (340aa)
Polyprenyl synthetase Tax=Rhodothermus marinus RepID=D0MJY4_RHOM4 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
polyprenyl synthetase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_323_27
R_OP11_Gottesmanbacteria_42_12, Gottesmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(32949..33107)
DNA (159bp) protein (53aa)
Tax=RIFCSPHIGHO2_01_FULL_OP11_Gottesmanbacteria_42_12_curated
PLM3-1_170_b2_sep16_scaffold_323_28
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33059..34495)
DNA (1437bp) protein (479aa)
Uncharacterized protein Tax=Sorangium cellulosum So0157-2 RepID=S4XRE2_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP34420.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
PLM3-1_170_b2_sep16_scaffold_323_29
Dickeya dadantii, Dickeya, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34530..34838
DNA (309bp) protein (103aa)
Uncharacterized protein Tax=Dickeya RepID=E0SDH8_DICD3
yfiM; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADM99788.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya.;" source="Dickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937)).;"
PLM3-1_170_b2_sep16_scaffold_323_30
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(34849..36255)
DNA (1407bp) protein (469aa)
Histidine kinase Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HBG2_ANADF bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
histidine kinase
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying items 1-30 of 40 in total

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