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PLM3-1_170_b2_sep16_scaffold_649

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_649_1
unknown

Not on your lists

comp(3..92)
DNA (90bp) protein (30aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_649_trna_4
unknown

Not on your lists

comp(1194..1267)
DNA (74bp)
transferRNA Arg
PLM3-1_170_b2_sep16_scaffold_649_2
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1767..2114
DNA (348bp) protein (116aa)
carbohydrate-binding family V/XII Tax=Cupriavidus sp. UYPR2.512 RepID=UPI000363BBC0
autotransporter
Autotransporter {ECO:0000313|EMBL:ABR90672.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
PLM3-1_170_b2_sep16_scaffold_649_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2119..3174)
DNA (1056bp) protein (352aa)
RNA polymerase sigma factor Tax=Selenomonas sp. F0473 RepID=K9CGS8_9FIRM bin=16ft_combo_ws3_JS1 species=Selenomonas sp. F0473 genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RNA polymerase sigma-70 subunit RpoD
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_649_4
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(3179..3484)
DNA (306bp) protein (102aa)
acylphosphatase (EC:3.6.1.7)
Acylphosphatase Tax=Thermococcus litoralis DSM 5473 RepID=H3ZK08_THELI
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_170_b2_sep16_scaffold_649_trna_3
unknown

Not on your lists

comp(3527..3600)
DNA (74bp)
transferRNA Pro
PLM3-1_170_b2_sep16_scaffold_649_5
RBG_19FT_COMBO_Deltaproteobacteria_46_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3677..4339)
DNA (663bp) protein (221aa)
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase 2 Tax=Geobacter uraniireducens (strain Rf4) RepID=PIMT2_GEOUR
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_9_curated
PLM3-1_170_b2_sep16_scaffold_649_6
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(4329..5090)
DNA (762bp) protein (254aa)
surE; 5'/3'-nucleotidase SurE (EC:3.1.3.5 3.1.3.6); K03787 5'-nucleotidase [EC:3.1.3.5] bin=bin1_lowGC species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin1_lowGC organism_group=Unknown_CP
stationary-phase survival protein SurE
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_649_7
R_WOR_2_63_39, WOR-2, Bacteria

Not on your lists

comp(5090..5752)
DNA (663bp) protein (221aa)
family 2 glycosyl transferase bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
dolichyl-phosphate mannose synthase-like protein
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_63_39_curated
PLM3-1_170_b2_sep16_scaffold_649_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5752..6642)
DNA (891bp) protein (297aa)
Lauroyl/myristoyl acyltransferase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEP4_CHLTF bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
acyltransferase, HtrB family
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_649_trna_2
unknown

Not on your lists

comp(6728..6801)
DNA (74bp)
transferRNA Pro
PLM3-1_170_b2_sep16_scaffold_649_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6889..7278)
DNA (390bp) protein (130aa)
Uncharacterized HTH-type transcriptional regulator in himA 3'region (Modular protein) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFB2_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_649_10
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7290..8312)
DNA (1023bp) protein (341aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394, ECO:0000256|RuleBase:RU000439};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=GPDA_PELPB bin=16ft_combo_ws3_JS1 species=Pelodictyon phaeoclathratiforme genus=Pelodictyon taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
gpsA; glycerol-3-phosphate dehydrogenase
PLM3-1_170_b2_sep16_scaffold_649_11
GWA2_OP3_52_8_curated, Omnitrophica, Bacteria

Not on your lists

comp(8309..8941)
DNA (633bp) protein (211aa)
hypothetical protein Tax=Verrucomicrobium sp. 3C RepID=UPI00036D9940
membrane protein
Tax=GWA2_OP3_52_8_curated
PLM3-1_170_b2_sep16_scaffold_649_12
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9003..10316)
DNA (1314bp) protein (438aa)
GTPase Der Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WQ60_KYRT2
ribosome-associated GTPase EngA
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Kyrpidia.;" source="Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) (Bacillus; tusciae).;"
PLM3-1_170_b2_sep16_scaffold_649_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(10322..11611)
DNA (1290bp) protein (430aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3-1_170_b2_sep16_scaffold_649_trna_1
unknown

Not on your lists

comp(11729..11800)
DNA (72bp)
transferRNA Gly
PLM3-1_170_b2_sep16_scaffold_649_14
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11849..12775)
DNA (927bp) protein (309aa)
tRNA dimethylallyltransferase {ECO:0000255|HAMAP-Rule:MF_00185}; EC=2.5.1.75 {ECO:0000255|HAMAP-Rule:MF_00185};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000255|HAMAP-Rule:MF_00185}; Short=DMAPP:tRNA dimethylallyltransferase {ECO:0000255|HAMAP-Rule:MF_00185};; Short=DMATase {ECO:0000255|HAMAP-Rule:MF_00185};; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000255|HAMAP-Rule:MF_00185}; Short=IPP transferase {ECO:0000255|HAMAP-Rule:MF_00185};; Short=IPPT {ECO:0000255|HAMAP-Rule:MF_00185};; Short=IPTase {ECO:0000255|HAMAP-Rule:MF_00185};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
tRNA dimethylallyltransferase Tax=Geobacter metallireducens RepID=MIAA_GEOMG
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase
PLM3-1_170_b2_sep16_scaffold_649_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(12780..14561)
DNA (1782bp) protein (594aa)
DNA mismatch repair protein MutL Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A251_STAND bin=16ft_combo_ws3_JS1 species=Starkeya novella genus=Starkeya taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
DNA mismatch repair protein MutL
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_649_16
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(14566..15780)
DNA (1215bp) protein (405aa)
Peptidase M24 family protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I0A5_CALAS
peptidase M24 family protein
Peptidase M24 family protein {ECO:0000313|EMBL:BAL98692.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM3-1_170_b2_sep16_scaffold_649_17
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15839..18139)
DNA (2301bp) protein (767aa)
Putative Nif-specific regulatory protein bin=GWC2_Deltaproteobacteria_42_51 species=ACD39 genus=ACD39 taxon_order=ACD39 taxon_class=ACD39 phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
PLM3-1_170_b2_sep16_scaffold_649_18
RLO_PLX_64_10, Bacteria

Not on your lists

comp(18350..19603)
DNA (1254bp) protein (418aa)
YD repeat protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01QH4_SOLUE bin=16ft_combo_ws3_JS1 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
YD repeat-containing protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
Displaying 22 items

View Taxonomy