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PLM3-1_170_b2_sep16_scaffold_734

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_734_1
unknown

Not on your lists

comp(14..304)
DNA (291bp) protein (97aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_734_2
R_Deltaproteobacteria_47_10, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(301..744)
DNA (444bp) protein (148aa)
50S ribosomal protein L9 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RL9_GEMAT
rplI; 50S ribosomal protein L9
Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_47_10_curated
PLM3-1_170_b2_sep16_scaffold_734_3
CG_Syntroph_01, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(753..1691)
DNA (939bp) protein (313aa)
Hypothetical membrane protein bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
membrane protein
Tax=CG_Syntroph_01
PLM3-1_170_b2_sep16_scaffold_734_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


comp(1726..1968)
DNA (243bp) protein (81aa)
30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
30S ribosomal protein S18
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_734_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


comp(2017..2382)
DNA (366bp) protein (122aa)
30S ribosomal protein S6 Tax=Synechocystis sp. PCC 7509 RepID=L8KUE4_9SYNC bin=16ft_combo_ws3_JS1 species=Synechocystis sp. PCC 7509 genus=Synechocystis taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
30S ribosomal protein S6
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_734_6
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2390..2968)
DNA (579bp) protein (193aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase Tax=Clostridium sp. CAG:58 RepID=R6S1G4_9CLOT
PLM3-1_170_b2_sep16_scaffold_734_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


comp(2979..3644)
DNA (666bp) protein (222aa)
50S ribosomal protein L25 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=RL25_HALOH bin=16ft_combo_ws3_JS1 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_734_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3676..4689)
DNA (1014bp) protein (338aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_734_trna_6
unknown

Not on your lists

comp(4913..4984)
DNA (72bp)
transferRNA Gln
PLM3-1_170_b2_sep16_scaffold_734_9
RIFOXYB2_FULL_RIF07_49_35_curated, RIF7, Bacteria

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comp(5061..5357)
DNA (297bp) protein (99aa)
regulatory protein SpoVG; K06412 stage V sporulation protein G bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
SpoVG family protein
Tax=RIFOXYB2_FULL_RIF07_49_35_curated
PLM3-1_170_b2_sep16_scaffold_734_10
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(5467..6357)
DNA (891bp) protein (297aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase Tax=Exiguobacterium antarcticum (strain B7) RepID=K0A7A9_EXIAB
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
PLM3-1_170_b2_sep16_scaffold_734_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(6361..7266)
DNA (906bp) protein (302aa)
Putative conserved membrane protein bin=GWC2_Methylomirabilis_70_16 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
4-hydroxybenzoate polyprenyltransferase
Tax=GWC2_Rokubacteria_70_16_curated
PLM3-1_170_b2_sep16_scaffold_734_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7263..7955)
DNA (693bp) protein (231aa)
Phosphoheptose isomerase Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IS24_RHOCS bin=16ft_combo_ws3_JS1 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
phosphoheptose isomerase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_734_13
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7952..8809)
DNA (858bp) protein (286aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase bin=GWC2_Deltaproteobacteria_66_88 species=Paenibacillus sp. genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
Tax=GWA2_Deltaproteobacteria_65_63_curated
PLM3-1_170_b2_sep16_scaffold_734_14
BJP_IG2102_Elusimicrobia_52_42, Elusimicrobia lineage II, Elusimicrobia, Bacteria

Not on your lists

comp(8819..9883)
DNA (1065bp) protein (355aa)
strD; glucose-1-phosphate thymidylyltransferase (dTDP-glucose synthase) (dTDP-glucose pyrophosphorylase) (Sugar-nucleotidylation enzyme) (EC:2.7.7.24)
dTDP-glucose pyrophosphorylase-like protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B4G8_STRRD bin=16ft_combo_ws3_JS1 species=Streptosporangium roseum genus=Streptosporangium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=BJP_IG2102_Elusimicrobia_52_42
PLM3-1_170_b2_sep16_scaffold_734_15
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

comp(9896..10423)
DNA (528bp) protein (176aa)
geranylgeranylglyceryl phosphate synthase (EC:2.5.1.41)
geranylgeranylglyceryl phosphate synthase Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B54552
Tax=CG_Deferri_01
PLM3-1_170_b2_sep16_scaffold_734_16
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10652..13327)
DNA (2676bp) protein (892aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter subterraneus DSM 13965.;"
Alanine--tRNA ligase Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PYG3_9FIRM
alanyl-tRNA synthetase
PLM3-1_170_b2_sep16_scaffold_734_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13328..13891)
DNA (564bp) protein (188aa)
Regulatory protein RecX Tax=uncultured candidate division OP1 bacterium RepID=H5SRP5_9BACT bin=16ft_combo_ws3_JS1 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
recX; regulatory protein RecX
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_734_18
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists


comp(13848..14939)
DNA (1092bp) protein (364aa)
Protein RecA Tax=Thermincola potens (strain JR) RepID=D5XER8_THEPJ
recA protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM3-1_170_b2_sep16_scaffold_734_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(15067..15675)
DNA (609bp) protein (203aa)
Putative uncharacterized protein Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67NU4_SYMTH
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3-1_170_b2_sep16_scaffold_734_20
candidate division Zixibacteria, Bacteria

Not on your lists

comp(15672..16916)
DNA (1245bp) protein (415aa)
CinA-like protein Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L9A5_9BACT
CinA-like protein {ECO:0000256|HAMAP-Rule:MF_00226, ECO:0000313|EMBL:EQB64307.1}; species="Bacteria.;" source="candidate division Zixibacteria bacterium RBG-1.;"
cinA; competence-damage inducible protein
PLM3-1_170_b2_sep16_scaffold_734_21
Chlorobaculum tepidum, Chlorobaculum, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(16913..17371)
DNA (459bp) protein (153aa)
Phosphatidylglycerophosphatase A {ECO:0000313|EMBL:AAM71582.1}; EC=3.1.3.27 {ECO:0000313|EMBL:AAM71582.1};; species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobaculum.;" source="Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 /; TLS).;"
Phosphatidylglycerophosphatase A Tax=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) RepID=Q8KFJ0_CHLTE
pgpA; phosphatidylglycerophosphatase A
PLM3-1_170_b2_sep16_scaffold_734_22
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17376..17954)
DNA (579bp) protein (193aa)
Mutual gliding protein A Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q095E5_STIAD
Mutual gliding-motility protein MglA {ECO:0000313|EMBL:AKF80392.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
mglA; Mutual gliding-motility protein
PLM3-1_170_b2_sep16_scaffold_734_23

Not on your lists

comp(17970..18473)
DNA (504bp) protein (168aa)
Marine sediment metagenome DNA, contig: S12H4_C03117 {ECO:0000313|EMBL:GAI63563.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_734_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(18710..19312)
DNA (603bp) protein (201aa)
Recombination protein RecR Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6YAG5_THEBD bin=16ft_combo_ws3_JS1 species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
recombination protein RecR
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_734_25
Natranaerobius thermophilus, Natranaerobius, Natranaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19318..19629)
DNA (312bp) protein (104aa)
Nucleoid-associated protein Nther_0016 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A301_NATTJ
hypothetical protein
Nucleoid-associated protein Nther_0016 {ECO:0000256|HAMAP-Rule:MF_00274}; species="Bacteria; Firmicutes; Clostridia; Natranaerobiales; Natranaerobiaceae; Natranaerobius.;" source="Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 /; JW/NM-WN-LF).;"
PLM3-1_170_b2_sep16_scaffold_734_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(19626..21488)
DNA (1863bp) protein (621aa)
DNA polymerase III subunits gamma/tau (EC:2.7.7.7)
DNA polymerase III, gamma and tau subunits Tax=Geobacter metallireducens RepID=Q39Q40_GEOMG bin=16ft_combo_ws3_JS1 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_734_27
Rhodopirellula europaea, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(21792..24203)
DNA (2412bp) protein (804aa)
Sulfatase family protein Tax=Rhodopirellula europaea SH398 RepID=M5S1B5_9PLAN
Sulfatase family protein {ECO:0000313|EMBL:EMI25398.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea SH398.;"
arylsulfatase A family protein
PLM3-1_170_b2_sep16_scaffold_734_trna_5
unknown

Not on your lists

comp(24300..24372)
DNA (73bp)
transferRNA Ala
PLM3-1_170_b2_sep16_scaffold_734_trna_4
unknown

Not on your lists

comp(24400..24486)
DNA (87bp)
transferRNA Ser
Displaying items 1-30 of 37 in total

View Taxonomy