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PLM3-1_170_b2_sep16_scaffold_933

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_933_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1..1746)
DNA (1746bp) protein (582aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_933_2
Enhygromyxa salina, Enhygromyxa, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1867..3924)
DNA (2058bp) protein (686aa)
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:KIG17309.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Enhygromyxa.;" source="Enhygromyxa salina.;"
ATP-dependent DNA helicase RecQ bin=GWF2_Methylomirabilis_70_14 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_933_3
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4082..4231
DNA (150bp) protein (50aa)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3-1_170_b2_sep16_scaffold_933_4
RBG_13_Aminicenantes_64_14_curated, Aminicenantes, Bacteria

Not on your lists

comp(4285..6903)
DNA (2619bp) protein (873aa)
serine/threonine protein kinase bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
serine/threonine protein kinase
Tax=RBG_13_Aminicenantes_64_14_curated
PLM3-1_170_b2_sep16_scaffold_933_5
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7038..7262
DNA (225bp) protein (75aa)
AbrB family transcriptional regulator bin=CD_OP8_4m species=Thioalkalivibrio sp. AKL17 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
AbrB family transcriptional regulator
Tax=RBG_13_Deltaproteobacteria_65_10_curated
PLM3-1_170_b2_sep16_scaffold_933_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

7391..10258
DNA (2868bp) protein (956aa)
Serine/threonine protein kinase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIB0_KORVE
serine/threonine protein kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b2_sep16_scaffold_933_7
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10292..11233)
DNA (942bp) protein (314aa)
Amidohydrolase Tax=Fibrisoma limi BUZ 3 RepID=I2GFL1_9BACT
Amidohydrolase {ECO:0000313|EMBL:CCH52686.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
tolB; translocation protein TolB
PLM3-1_170_b2_sep16_scaffold_933_8
unknown

Not on your lists

comp(11407..11946)
DNA (540bp) protein (180aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_933_9
Bacillus sp. B-jedd, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11988..13316)
DNA (1329bp) protein (443aa)
chromosomal replication initiation protein Tax=Alicyclobacillus pohliae RepID=UPI00035F3114
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. B-jedd.;"
chromosomal replication initiator protein dnaA
PLM3-1_170_b2_sep16_scaffold_933_10
unknown

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comp(13410..13979)
DNA (570bp) protein (190aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_933_11
GWA2_Elusimicrobia_51_34_curated, Elusimicrobia, Bacteria

Not on your lists

14071..14325
DNA (255bp) protein (85aa)
Ribonuclease P protein component bin=GWA2_Elusimicrobia_51_34 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
hypothetical protein
Tax=GWA2_Elusimicrobia_51_34_curated
PLM3-1_170_b2_sep16_scaffold_933_12
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14322..14579
DNA (258bp) protein (86aa)
Putative membrane protein insertion efficiency factor Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHU0_AZOSU
hypothetical protein
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
PLM3-1_170_b2_sep16_scaffold_933_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

14599..16374
DNA (1776bp) protein (592aa)
hypothetical protein; K03217 preprotein translocase subunit YidC bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_933_14
RBG_16_Chloroflexi_51_16_curated, Chloroflexi, Bacteria

Not on your lists

16377..17198
DNA (822bp) protein (274aa)
Putative uncharacterized protein bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
single-stranded nucleic acid binding R3H domain-containing protein
Tax=RBG_16_Chloroflexi_51_16_curated
PLM3-1_170_b2_sep16_scaffold_933_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17214..18590
DNA (1377bp) protein (459aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein Tax=Desulfurispora thermophila RepID=UPI0003605F2F
tRNA modification GTPase TrmE
PLM3-1_170_b2_sep16_scaffold_933_16
Capnocytophaga gingivalis, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

18607..20574
DNA (1968bp) protein (656aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M395_CAPGI
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga gingivalis ATCC 33624.;"
glucose-inhibited division protein A
PLM3-1_170_b2_sep16_scaffold_933_17
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

20516..21232
DNA (717bp) protein (239aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000255|HAMAP-Rule:MF_00074}; EC=2.1.1.- {ECO:0000255|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000255|HAMAP-Rule:MF_00074}; Short=16S rRNA m7G methyltransferase {ECO:0000255|HAMAP-Rule:MF_00074};; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
Ribosomal RNA small subunit methyltransferase G Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=RSMG_ROSCS
gidB; 16S rRNA methyltransferase GidB
PLM3-1_170_b2_sep16_scaffold_933_18
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

21883..22644
DNA (762bp) protein (254aa)
Cobyrinic acid ac-diamide synthase Tax=Alicyclobacillus RepID=C8WVA7_ALIAD bin=16ft_combo_ws3_JS1 species=unknown genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
cobyrinic acid ac-diamide synthase
Tax=RBG_16_Zixibacteria_53_22_curated
PLM3-1_170_b2_sep16_scaffold_933_19
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

22637..23545
DNA (909bp) protein (303aa)
Chromosome partitioning protein Spo0J Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q097E1_STIAD
ParB family protein
Tax=RBG_16_Acidobacteria_68_9_curated
PLM3-1_170_b2_sep16_scaffold_933_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

23726..24742
DNA (1017bp) protein (339aa)
ATPase AAA Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B759C4
ATPase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_933_21
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

24749..25651
DNA (903bp) protein (301aa)
Uncharacterized protein Tax=Rhodothermus marinus RepID=D0MEZ8_RHOM4 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_Zixibacteria_53_22_curated
PLM3-1_170_b2_sep16_scaffold_933_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

25668..27821
DNA (2154bp) protein (718aa)
Uncharacterized protein Tax=Salinibacter ruber RepID=Q2RZW9_SALRD bin=16ft_combo_ws3_JS1 species=Salinibacter ruber genus=Salinibacter taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_933_23
unknown

Not on your lists

comp(28120..28512)
DNA (393bp) protein (131aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_933_24
RBG_16_Actinobacteria_70_17_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(28757..29986)
DNA (1230bp) protein (410aa)
Uncharacterized protein bin=RBG_16_Aminicenantes_63_16_plus species=Acidaminococcus sp. CAG:542 genus=Acidaminococcus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
Tax=RBG_16_Actinobacteria_70_17_curated
PLM3-1_170_b2_sep16_scaffold_933_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

30030..31187
DNA (1158bp) protein (386aa)
Transcription-repair coupling factor Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RMB9_MOOTA bin=16ft_combo_ws3_JS1 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
transcription-repair coupling factor Mfd
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_933_26
unknown

Not on your lists

31300..33102
DNA (1803bp) protein (601aa)
PpiC-type peptidyl-prolyl cis-trans isomerase
PLM3-1_170_b2_sep16_scaffold_933_27
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

33099..34403
DNA (1305bp) protein (435aa)
PpiC-type peptidyl-prolyl cis-trans isomerase bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
surA; peptidyl-prolyl cis-trans isomerase SurA
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_933_28
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

34422..35465
DNA (1044bp) protein (348aa)
4-hydroxythreonine-4-phosphate dehydrogenase bin=GWC2_Methylomirabilis_70_16 species=Clostridium hathewayi genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase
Tax=CG_Nitrosp_02
PLM3-1_170_b2_sep16_scaffold_933_29
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35456..36199
DNA (744bp) protein (248aa)
cell division ATP-binding protein FtsE (EC:3.6.3.28)
Cell division ATP-binding protein FtsE Tax=Eubacterium plexicaudatum ASF492 RepID=N2A471_9FIRM
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:EMZ24147.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
PLM3-1_170_b2_sep16_scaffold_933_30
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

36199..37077
DNA (879bp) protein (293aa)
Cell division protein FtsX Tax=Veillonellaceae RepID=L1MZU0_9FIRM bin=16ft_combo_ws3_JS1 species=unknown genus=unknown taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Cell division protein FtsX
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying items 1-30 of 36 in total

View Taxonomy