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PLM3-1_170_b2_sep16_scaffold_1306

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1306_trna_1
unknown

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343..415
DNA (73bp)
transferRNA Lys
PLM3-1_170_b2_sep16_scaffold_1306_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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603..1472
DNA (870bp) protein (290aa)
LuxR family two component transcriptional regulator bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Brachybacterium squillarum genus=Brachybacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
LuxR family transcriptional regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1306_2
unknown

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1574..2083
DNA (510bp) protein (170aa)
hypothetical protein Tax=Calescamantes bacterium JGI 0000106-G12 RepID=UPI0003B34D9E
PLM3-1_170_b2_sep16_scaffold_1306_3

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2090..2731
DNA (642bp) protein (214aa)
Uncharacterized protein Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SIM4_RHOMR
Uncharacterized protein {ECO:0000313|EMBL:KKM21654.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_1306_4
unknown

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2728..3006
DNA (279bp) protein (93aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1306_5
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

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3399..5471
DNA (2073bp) protein (691aa)
histidine kinase (EC:2.7.13.3)
signal transduction histidine kinase bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
Tax=RBG_16_Zixibacteria_43_9_curated
PLM3-1_170_b2_sep16_scaffold_1306_6
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

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5473..6819
DNA (1347bp) protein (449aa)
Putative transcriptional regulatory protein ZraR Tax=Variovorax paradoxus B4 RepID=T1XKP5_VARPD
zraR; putative transcriptional regulatory protein ZraR
Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
PLM3-1_170_b2_sep16_scaffold_1306_7
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

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comp(6841..8154)
DNA (1314bp) protein (438aa)
Tax=BJP_IG2158_Zixibacteria_48_33
PLM3-1_170_b2_sep16_scaffold_1306_8
GWA2_Bdellovibrionales_49_15_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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comp(8358..9911)
DNA (1554bp) protein (518aa)
Putative uncharacterized protein bin=GWA2__Bacteriovorax-rel_49_15 species=Myxococcus xanthus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
choline dehydrogenase-like protein
Tax=GWA2_Bdellovibrionales_49_15_curated
PLM3-1_170_b2_sep16_scaffold_1306_9
unknown

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comp(9931..10497)
DNA (567bp) protein (189aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1306_10
unknown

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11076..11393
DNA (318bp) protein (106aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1306_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(11390..12121)
DNA (732bp) protein (244aa)
UPI00029AF947 related cluster Tax=unknown RepID=UPI00029AF947 bin=16ft_combo_ws3_JS1 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
LmbE family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1306_12
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12118..12423)
DNA (306bp) protein (102aa)
Uncharacterized protein Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CCS1_DESTA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFM27362.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1).;"
PLM3-1_170_b2_sep16_scaffold_1306_13
Hymenobacter swuensis, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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12456..13685
DNA (1230bp) protein (410aa)
hypothetical protein Tax=Hymenobacter aerophilus RepID=UPI0003662862
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHJ96859.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter swuensis DY53.;"
PLM3-1_170_b2_sep16_scaffold_1306_14
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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13738..14817
DNA (1080bp) protein (360aa)
GTP-binding protein YchF Tax=Candidatus Methylomirabilis oxyfera RepID=D5MEU1_9BACT
GTP-binding protein YchF
GTP-binding protein YchF {ECO:0000313|EMBL:CBE68270.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_1306_15
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

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14895..15782
DNA (888bp) protein (296aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029Q4_SOLUE
hypothetical protein
Tax=RBG_16_Caldithrix_48_16_curated
PLM3-1_170_b2_sep16_scaffold_1306_16
unknown

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15797..16369
DNA (573bp) protein (191aa)

This feature has no annotations

Displaying 17 items

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