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PLM3-1_170_b2_sep16_scaffold_1430

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1430_1
unknown

Not on your lists

comp(3..2951)
DNA (2949bp) protein (983aa)
UPI0003D1A455 related cluster Tax=unknown RepID=UPI0003D1A455
IPT/TIG domain/outer membrane autotransporter barrel domain-containing protein
PLM3-1_170_b2_sep16_scaffold_1430_2
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

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comp(3347..4633)
DNA (1287bp) protein (429aa)
Protein serine/threonine phosphatase with GAF(S) sensor(S) bin=GWC2_Ignavibacteria_56_12 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
GAF sensor-containing protein serine phosphatase
Tax=RBG_13_Caldithrix_44_9_curated
PLM3-1_170_b2_sep16_scaffold_1430_3
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4711..5094)
DNA (384bp) protein (128aa)
chemotaxis protein CheY Tax=Halomonas smyrnensis RepID=UPI0002F09A15
response regulator receiver protein
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM3-1_170_b2_sep16_scaffold_1430_4
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(5087..6040)
DNA (954bp) protein (318aa)
Signal transduction histidine kinase bin=GWC2_Nitrospirae_57_13 species=Desulfosporosinus orientis genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
ATPase ATP-binding domain-containing protein
Tax=GWC2_Nitrospirae_57_9_curated
PLM3-1_170_b2_sep16_scaffold_1430_5
unknown

Not on your lists

comp(6075..7289)
DNA (1215bp) protein (405aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1430_6
unknown

Not on your lists

comp(7344..7616)
DNA (273bp) protein (91aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1430_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(7613..9484)
DNA (1872bp) protein (624aa)
Protein tolB Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJZ0_9BACT
tolB; protein tolB
Protein tolB {ECO:0000313|EMBL:CBE67573.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_1430_8
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9683..11302)
DNA (1620bp) protein (540aa)
Sigma-54 dependent transcription regulator Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CMK3_MYXFH
sigma-54 dependent transcription regulator
Sigma-54 dependent transcription regulator {ECO:0000313|EMBL:AEI65282.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus (strain ATCC BAA-855 / HW-1).;"
PLM3-1_170_b2_sep16_scaffold_1430_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11443..12168)
DNA (726bp) protein (242aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Turneriella parva genus=Turneriella taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alpha amylase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1430_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12185..12802)
DNA (618bp) protein (206aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI21_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV99624.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3-1_170_b2_sep16_scaffold_1430_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12759..14141)
DNA (1383bp) protein (461aa)
Uncharacterized protein Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI21_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV99624.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
PLM3-1_170_b2_sep16_scaffold_1430_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

14386..14787
DNA (402bp) protein (134aa)
DoxX family protein Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J617_CYCMS bin=16ft_combo_ws3_JS1 species=Cyclobacterium marinum genus=Cyclobacterium taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative transmembrane DoxX protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1430_13
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14792..15385)
DNA (594bp) protein (198aa)
SCP-like extracellular Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U427_ETHHY
hypothetical protein
SCP-like extracellular {ECO:0000313|EMBL:ADU27707.1}; Flags: Precursor;; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
PLM3-1_170_b2_sep16_scaffold_1430_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15566..15916)
DNA (351bp) protein (117aa)
id=4404038 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3-1_170_b2_sep16_scaffold_1430_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(15918..16289)
DNA (372bp) protein (124aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b2_sep16_scaffold_1430_16
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

Not on your lists

comp(16318..17313)
DNA (996bp) protein (332aa)
Gll3435 protein Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NFT9_GLOVI
hypothetical protein
Tax=RBG_16_Chloroflexi_54_18_curated
PLM3-1_170_b2_sep16_scaffold_1430_17
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(17310..18983)
DNA (1674bp) protein (558aa)
amine oxidase bin=bin8_Chloro tax=bin8_Chloro organism_group=Chloroflexi
amine oxidase
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
PLM3-1_170_b2_sep16_scaffold_1430_18
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(18980..20563)
DNA (1584bp) protein (528aa)
FAD dependent oxidoreductase Tax=bacterium symbiont of Plakortis simplex pPS11G3 RepID=V5JB99_9BACT
FAD dependent oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM3-1_170_b2_sep16_scaffold_1430_19
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(20560..21747)
DNA (1188bp) protein (396aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI000382EFE5
glycine cleavage T protein (aminomethyl transferase)
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b2_sep16_scaffold_1430_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(21847..22449)
DNA (603bp) protein (201aa)
Peroxiredoxin bin=GWA2_OP3_53_43 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM3-1_170_b2_sep16_scaffold_1430_21
R_Elusimicrobia_64_13, Elusimicrobia, Bacteria

Not on your lists

comp(22546..23355)
DNA (810bp) protein (270aa)
Thiol:disulfide interchange protein DsbD, putative Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IRI6_RHOCS
dsbD; thiol:disulfide interchange protein DsbD
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_64_13_curated
PLM3-1_170_b2_sep16_scaffold_1430_22
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23545..24522)
DNA (978bp) protein (326aa)
Uncharacterized protein Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJ75_XANP2
Uncharacterized protein {ECO:0000313|EMBL:ABS68068.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
conserved membrane protein of unknown function
PLM3-1_170_b2_sep16_scaffold_1430_23
Brevibacillus borstelensis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24554..25666)
DNA (1113bp) protein (371aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus borstelensis AK1.;"
Putative ribosome biogenesis GTPase RsgA Tax=Brevibacillus borstelensis AK1 RepID=M8E916_9BACL
protein RsgA2
PLM3-1_170_b2_sep16_scaffold_1430_24
unknown

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comp(26013..26135)
DNA (123bp) protein (41aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1430_25
endosymbiont of Tevnia jerichonana, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26083..26859)
DNA (777bp) protein (259aa)
Sensor protein gacS Tax=sulfur-oxidizing symbionts RepID=G2DC63_9GAMM
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:EGW53628.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Tevnia jerichonana (vent Tica).;"
Crp/FNR family transcriptional regulator, anaerobic regulatory protein
PLM3-1_170_b2_sep16_scaffold_1430_26
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

27122..27625
DNA (504bp) protein (168aa)
hypothetical protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM3-1_170_b2_sep16_scaffold_1430_27
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(27678..29501)
DNA (1824bp) protein (608aa)
FG-GAP repeat domain protein Tax=Microscilla marina ATCC 23134 RepID=A1ZP22_9BACT bin=16ft_combo_ws3_JS1 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1430_28
RBG_16_Zixibacteria_40_9_curated, Zixibacteria, Bacteria

Not on your lists

comp(29501..31531)
DNA (2031bp) protein (677aa)
Putative multicopper oxidase Tax=Clostridium pasteurianum BC1 RepID=R4K049_CLOPA
putative multicopper oxidase
Tax=RBG_16_Zixibacteria_40_9_curated
PLM3-1_170_b2_sep16_scaffold_1430_29
unknown

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31764..32117
DNA (354bp) protein (118aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1430_30
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(32139..32762)
DNA (624bp) protein (208aa)
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:CDM64699.1}; EC=3.5.1.4 {ECO:0000313|EMBL:CDM64699.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Amidase Tax=Pedosphaera parvula Ellin514 RepID=B9XKM4_9BACT
Amidase
Displaying 30 items

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