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PLM3-1_170_b2_sep16_scaffold_1506

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1506_1
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

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2..1927
DNA (1926bp) protein (642aa)
NHL repeat containing protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
Split soret cytochrome c precursor
Tax=RBG_13_Caldithrix_44_9_curated
PLM3-1_170_b2_sep16_scaffold_1506_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

2252..2830
DNA (579bp) protein (193aa)
alias=16ft_combo_ws3_scaffold_896_12 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1506_3
unknown

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2873..3385
DNA (513bp) protein (171aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1506_4
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(3426..4856)
DNA (1431bp) protein (477aa)
Dihydrolipoyl dehydrogenase Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CUP2_TRURR
dihydrolipoamide dehydrogenase
Tax=CG_Arma_01
PLM3-1_170_b2_sep16_scaffold_1506_5
Thermus thermophilus, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(4858..6177)
DNA (1320bp) protein (440aa)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61;; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579).;"
2-oxoglutarate dehydrogenase E2 component (Dihydrolipoamide succinyltransferase) Tax=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) RepID=Q5SLK5_THET8
2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase)
PLM3-1_170_b2_sep16_scaffold_1506_6
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(6225..9038)
DNA (2814bp) protein (938aa)
2-oxoglutarate dehydrogenase E1 (EC:1.2.4.2)
2-oxoglutarate dehydrogenase, E1 subunit {ECO:0000313|EMBL:AEB12586.1}; EC=1.2.4.2 {ECO:0000313|EMBL:AEB12586.1};; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1).;"
2-oxoglutarate dehydrogenase, E1 subunit Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NR08_MARHT
PLM3-1_170_b2_sep16_scaffold_1506_7
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

9214..10578
DNA (1365bp) protein (455aa)
succinate-semialdehyde dehydrogenase (NAD(P)(+)) (EC:1.2.1.16)
Succinate-semialdehyde dehydrogenase (NAD(P)(+)) {ECO:0000313|EMBL:AEN72789.1}; EC=1.2.1.16 {ECO:0000313|EMBL:AEN72789.1};; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
Succinate-semialdehyde dehydrogenase (NAD(P)(+)) Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SK33_RHOMR
PLM3-1_170_b2_sep16_scaffold_1506_8
Streptomyces auratus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(10509..12074)
DNA (1566bp) protein (522aa)
30S ribosomal protein S5 Tax=Streptomyces auratus AGR0001 RepID=J2JYA1_9ACTO
30S ribosomal protein S5 {ECO:0000313|EMBL:EJJ05105.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces auratus AGR0001.;"
30S ribosomal protein S5
PLM3-1_170_b2_sep16_scaffold_1506_9
unknown

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12409..12570
DNA (162bp) protein (54aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1506_10
unknown

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13072..13692
DNA (621bp) protein (207aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1506_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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14229..15716
DNA (1488bp) protein (496aa)
hypothetical protein bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
inner membrane protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM3-1_170_b2_sep16_scaffold_1506_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(15799..18036)
DNA (2238bp) protein (746aa)
hypothetical protein bin=CNBR_ACIDO species=Lewinella persica genus=Lewinella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM3-1_170_b2_sep16_scaffold_1506_13
unknown

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comp(18066..18659)
DNA (594bp) protein (198aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1506_14
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

19225..19803
DNA (579bp) protein (193aa)
Serine phosphatase Tax=uncultured Acidobacteria bacterium RepID=G8DPN7_9BACT
Serine phosphatase {ECO:0000313|EMBL:AER58215.1}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
rsbU; serine phosphatase RsbU regulator sigma subunit
PLM3-1_170_b2_sep16_scaffold_1506_15
RBG_19FT_COMBO_Zixibacteria_42_43_curated, Zixibacteria, Bacteria

Not on your lists

comp(19810..21090)
DNA (1281bp) protein (427aa)
Uncharacterized protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
Tax=RBG_19FT_COMBO_Zixibacteria_42_43_curated
PLM3-1_170_b2_sep16_scaffold_1506_16
unknown

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comp(21198..21839)
DNA (642bp) protein (214aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1506_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(21829..22545)
DNA (717bp) protein (239aa)
RNA polymerase sigma-70 factor, ECF subfamily protein Tax=mine drainage metagenome RepID=E6PFB2_9ZZZZ bin=16ft_combo_ws3_JS1 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RNA polymerase sigma factor
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1506_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

22671..23084
DNA (414bp) protein (138aa)
alias=16ft_combo_ws3_scaffold_1406_29 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1506_19
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(23133..23963)
DNA (831bp) protein (277aa)
diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] bin=bin3_NC10 species=Dictyoglomus turgidum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=bin3_NC10 organism_group=NC10
dapF; diaminopimelate epimerase (EC:5.1.1.7)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1506_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(23950..24639)
DNA (690bp) protein (230aa)
nucleoside-triphosphatase rdgB (EC:3.6.1.15); K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] bin=BACIGN_2 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
Carboxymuconolactone decarboxylase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Displaying 20 items

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