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PLM3-1_170_b2_sep16_scaffold_1834

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1834_1
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1408)
DNA (1407bp) protein (469aa)
M16 family peptidase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U1Q2_MYXSD
Peptidase M16 {ECO:0000313|EMBL:AKF79538.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
M16 family peptidase
PLM3-1_170_b2_sep16_scaffold_1834_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

1540..2337
DNA (798bp) protein (266aa)
Uncharacterized protein Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZUQ6_OPITP bin=16ft_combo_ws3_JS1 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1834_3
unknown

Not on your lists

2511..2738
DNA (228bp) protein (76aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1834_4
unknown

Not on your lists

2788..3054
DNA (267bp) protein (89aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1834_5
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(3079..3909)
DNA (831bp) protein (277aa)
Methyltransferase family protein bin=GWA2_Ignavibacteria_55_11 species=Rhizobium leguminosarum genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
type 11 methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
PLM3-1_170_b2_sep16_scaffold_1834_6
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(3923..4708)
DNA (786bp) protein (262aa)
Band 7 protein bin=GWA2_Ignavibacteria_55_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
membrane protease subunit
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b2_sep16_scaffold_1834_7
Georgenia sp. SUBG003, Georgenia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4851..5498)
DNA (648bp) protein (216aa)
2-hydroxycyclohexanecarboxyl-CoA dehydrogenase Tax=Streptomyces viridochromogenes DSM 40736 RepID=D9XGA7_STRVR
Short-chain dehydrogenase {ECO:0000313|EMBL:KEP22716.1}; species="Bacteria; Actinobacteria; Micrococcales; Bogoriellaceae; Georgenia.;" source="Georgenia sp. SUBG003.;"
short-chain dehydrogenase/reductase SDR
PLM3-1_170_b2_sep16_scaffold_1834_8
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5575..7104)
DNA (1530bp) protein (510aa)
malate dehydrogenase (EC:1.1.1.38); K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] bin=bin8_Chloro species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
malate dehydrogenase (EC:1.1.1.40)
NAD-dependent malic enzyme {ECO:0000313|EMBL:EYF03748.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
PLM3-1_170_b2_sep16_scaffold_1834_9
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(7166..7633)
DNA (468bp) protein (156aa)
Uncharacterized protein Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TP37_9CHLR
hypothetical protein
Tax=RBG_13_Chloroflexi_66_10_curated
PLM3-1_170_b2_sep16_scaffold_1834_10
RLO_RIF05_58_11, RIF5, Bacteria

Not on your lists

comp(7630..8079)
DNA (450bp) protein (150aa)
Uncharacterized protein Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UJU5_MYXSD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
PLM3-1_170_b2_sep16_scaffold_1834_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

8248..10071
DNA (1824bp) protein (608aa)
GTP-binding protein TypA; K06207 GTP-binding protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Sulfurihydrogenibium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
typA; GTP-binding protein TypA
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1834_12
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

10064..12610
DNA (2547bp) protein (849aa)
Serine/threonine protein kinase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01P82_SOLUE
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:ABJ88538.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3-1_170_b2_sep16_scaffold_1834_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12665..13135)
DNA (471bp) protein (157aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG92736.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM3-1_170_b2_sep16_scaffold_1834_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

13197..13544
DNA (348bp) protein (116aa)
Nucleic acid binding, OB-fold, tRNA/helicase-type Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01RV1_SOLUE bin=16ft_combo_ws3_JS1 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1834_15
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(13618..15879)
DNA (2262bp) protein (754aa)
PKD domain containing protein Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X5H5_ACISM
PKD domain-containing protein
PKD domain containing protein {ECO:0000313|EMBL:ADW69522.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9).;"
PLM3-1_170_b2_sep16_scaffold_1834_16
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

16122..16877
DNA (756bp) protein (252aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00038011BC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ85666.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3-1_170_b2_sep16_scaffold_1834_17
unknown

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comp(17059..17355)
DNA (297bp) protein (99aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1834_18
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

17402..17932
DNA (531bp) protein (177aa)
Putative uncharacterized protein Tax=Chlorobium limicola (strain DSM 245 / NBRC 103803) RepID=B3ECV2_CHLL2
hypothetical protein
Tax=RBG_16_Chloroflexi_57_11_curated
PLM3-1_170_b2_sep16_scaffold_1834_19
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(17895..19097)
DNA (1203bp) protein (401aa)
Serine phosphatase RsbU subunit sigma Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AHT5_IGNAJ bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
stage II sporulation E family protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b2_sep16_scaffold_1834_20
unknown

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comp(19204..19470)
DNA (267bp) protein (89aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1834_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(20012..21370)
DNA (1359bp) protein (453aa)
Fis family transcriptional regulator; K02481 two-component system, NtrC family, response regulator bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
sigma-54 dependent DNA-binding response regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1834_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(21363..22559)
DNA (1197bp) protein (399aa)
Histidine kinase Tax=Desulfovibrio africanus RepID=F3Z1R3_DESAF bin=16ft_combo_ws3_JS1 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
histidine kinase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_1834_23
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

22824..23264
DNA (441bp) protein (147aa)
heat shock protein Hsp20; K13993 HSP20 family protein bin=bin7_NC10_sister species=Thermodesulfatator atlanticus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
heat shock protein Hsp20
Tax=CSP1_6_Rokubacteria
PLM3-1_170_b2_sep16_scaffold_1834_24
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

23329..24201
DNA (873bp) protein (291aa)
Nucleotidyl transferase bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nucleotidyl transferase
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3-1_170_b2_sep16_scaffold_1834_25
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

24213..24698
DNA (486bp) protein (162aa)
CBS protein Tax=uncultured bacterium RepID=K1YFJ3_9BACT
yhcV2; hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM3-1_170_b2_sep16_scaffold_1834_26
RBG_13_RIF08_66_14_curated, RIF8, Bacteria

Not on your lists

comp(24695..25195)
DNA (501bp) protein (167aa)
GCN5-related N-acetyltransferase Tax=Desulfovibrio sp. FW1012B RepID=G7Q3X0_9DELT
acetyltransferase
Tax=RBG_13_RIF08_66_14_curated
PLM3-1_170_b2_sep16_scaffold_1834_27
Aureobasidium subglaciale, Aureobasidium, Dothideales, Dothideomycetidae, Ascomycota, Fungi

Not on your lists

comp(25204..25557)
DNA (354bp) protein (118aa)
Uncharacterized protein {ECO:0000313|EMBL:KER00772.1}; species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Dothideomycetidae; Dothideales; Aureobasidiaceae; Aureobasidium.;" source="Aureobasidium subglaciale EXF-2481.;"
PLM3-1_170_b2_sep16_scaffold_1834_28
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(25648..26070)
DNA (423bp) protein (141aa)
SCP2 domain protein Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3ISV6_NATPD
sterol carrier protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM3-1_170_b2_sep16_scaffold_1834_29
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(26074..27477)
DNA (1404bp) protein (468aa)
Oxygen-dependent FAD-linked oxidoreductase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U5U6_MYXSD
oxygen-dependent FAD-linked oxidoreductase
Oxygen-dependent FAD-linked oxidoreductase {ECO:0000313|EMBL:AGC42942.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
PLM3-1_170_b2_sep16_scaffold_1834_30
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(27474..28037)
DNA (564bp) protein (188aa)
alias=16ft_combo_ws3_scaffold_607_25 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying items 1-30 of 40 in total

View Taxonomy