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PLM3-1_170_b2_sep16_scaffold_10591

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_10591_1
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

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comp(1..858)
DNA (858bp) protein (286aa)
hisC; histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase bin=GWC2_Nitrospirae_57_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
Tax=GWC2_Nitrospirae_57_13_curated
PLM3-1_170_b2_sep16_scaffold_10591_2
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(888..1547)
DNA (660bp) protein (220aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Ammonifex degensii (strain DSM 10501 / KC4).;"
Pseudouridine synthase Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R7X1_AMMDK
pseudouridine synthase
PLM3-1_170_b2_sep16_scaffold_10591_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1621..2208)
DNA (588bp) protein (196aa)
scpB; Segregation and condensation protein B; K06024 segregation and condensation protein B bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
scpB; chromosome segregation and condensation protein ScpB
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_10591_4
CG_Delta_03, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2208..2543)
DNA (336bp) protein (112aa)
Segregation and condensation protein A Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSI7_9FIRM
chromosome segregation and condensation protein ScpA
Tax=CG_Delta_03
PLM3-1_170_b2_sep16_scaffold_10591_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(2630..2971)
DNA (342bp) protein (114aa)
Chromosome segregation and condensation protein ScpA Tax=Geobacter sulfurreducens RepID=D7AJR2_GEOSK bin=16ft_combo_ws3_JS1 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
scpA; segregation and condensation protein A
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_10591_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(2968..3966)
DNA (999bp) protein (333aa)
tryptophanyl-tRNA synthetase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Marinimicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
tryptophanyl-tRNA synthetase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_10591_7
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

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comp(3963..4607)
DNA (645bp) protein (215aa)
Peptidase Tax=planctomycete KSU-1 RepID=I3IID0_9PLAN
hypothetical protein
Tax=CG_Deferri_01
PLM3-1_170_b2_sep16_scaffold_10591_8
RLO_PLX_64_10, Bacteria

Not on your lists

comp(4655..6016)
DNA (1362bp) protein (454aa)
processing peptidase (EC:3.4.24.64)
peptidase M16 Tax=cyanobacterium PCC 7702 RepID=UPI00036AAB5C
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_170_b2_sep16_scaffold_10591_9
unknown

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6212..6691
DNA (480bp) protein (160aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_10591_trna_1
unknown

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comp(6699..6771)
DNA (73bp)
transferRNA Ala
PLM3-1_170_b2_sep16_scaffold_10591_10
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6890..7237
DNA (348bp) protein (116aa)
UDP-N-acetylmuramate--L-alanine ligase Tax=Sphingopyxis sp. MC1 RepID=N9WHK1_9SPHN
Mur ligase, middle region
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
PLM3-1_170_b2_sep16_scaffold_10591_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

7219..8271
DNA (1053bp) protein (351aa)
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
ErfK/YbiS/YcfS/YnhG family protein Tax=Holophaga foetida DSM 6591 RepID=H1P0C4_9BACT bin=16ft_combo_ws3_JS1 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3-1_170_b2_sep16_scaffold_10591_12
unknown

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comp(8233..8982)
DNA (750bp) protein (250aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_10591_13
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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comp(9211..10623)
DNA (1413bp) protein (471aa)
delta-1-pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12); K00294 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.1.12] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Fervidobacterium pennivorans genus=Fervidobacterium taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
delta-1-pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
Displaying 14 items

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