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PLM3-1_170_b2_sep16_scaffold_4763

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_4763_1
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(3..359)
DNA (357bp) protein (119aa)
Integral membrane sensor signal transduction histidine kinase Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LJT7_SYNFM
integral membrane sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_2
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(492..1175)
DNA (684bp) protein (228aa)
Two component transcriptional regulator, winged helix family Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LJT8_SYNFM
two component transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_3
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(1496..1867)
DNA (372bp) protein (124aa)
queF; NADPH-dependent 7-cyano-7-deazaguanine reductase (7-cyano-7-carbaguanine reductase) (PreQ(0) reductase) (NADPH-dependent nitrile oxidoreductase) (EC:1.7.1.13)
NADPH-dependent 7-cyano-7-deazaguanine reductase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MEZ4_9BACT
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_4
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(1881..2351)
DNA (471bp) protein (157aa)
DoxX protein bin=bin7_NC10_sister species=Desulfitobacterium dichloroeliminans genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_5
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(2359..2940)
DNA (582bp) protein (194aa)
Threonine ammonia-lyase, biosynthetic Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L1A5_THERP
threonine ammonia-lyase, biosynthetic
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_6
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(2989..3183)
DNA (195bp) protein (65aa)
Threonine ammonia-lyase, biosynthetic Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L1A5_THERP
threonine ammonia-lyase, biosynthetic
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_7
R_NC10_66_22, NC10, Bacteria

Not on your lists

3570..4463
DNA (894bp) protein (298aa)
Xylose isomerase domain protein TIM barrel Tax=Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167) RepID=A8MCI3_CALMQ
xylose isomerase domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_8
R_NC10_66_22, NC10, Bacteria

Not on your lists

4807..5190
DNA (384bp) protein (128aa)
Uncharacterized protein Tax=planctomycete KSU-1 RepID=I3IQ55_9PLAN
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_9
R_NC10_66_22, NC10, Bacteria

Not on your lists

5310..5708
DNA (399bp) protein (133aa)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_10
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(5828..6175)
DNA (348bp) protein (116aa)
Uncharacterized protein Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JAI3_ANAD2
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_11
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(6225..7016)
DNA (792bp) protein (264aa)
Alpha/beta hydrolase fold bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Alpha/beta hydrolase fold
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_12
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(7066..8127)
DNA (1062bp) protein (354aa)
hypothetical protein bin=bin3_NC10 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3-1_170_b2_sep16_scaffold_4763_13
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(8475..9524)
DNA (1050bp) protein (350aa)
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase Tax=Halomonas sp. KM-1 RepID=UPI00028943A2
Tax=RBG_16_NC10_65_8_curated
PLM3-1_170_b2_sep16_scaffold_4763_14
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(9541..10182)
DNA (642bp) protein (214aa)
Uncharacterized protein bin=GWC2_Nitrospirae_57_13 species=Geitlerinema sp. PCC 7407 genus=Geitlerinema taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_15
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(10308..10982)
DNA (675bp) protein (225aa)
id=14429578 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_16
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(11036..11335)
DNA (300bp) protein (100aa)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_17
unknown

Not on your lists

12089..12433
DNA (345bp) protein (115aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_4763_18
unknown

Not on your lists

13253..13573
DNA (321bp) protein (107aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_4763_19
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(13667..13969)
DNA (303bp) protein (101aa)
hypothetical protein bin=bin3_NC10 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM3-1_170_b2_sep16_scaffold_4763_20
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

14336..14815
DNA (480bp) protein (160aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Planctomyces brasiliensis genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_Armatimonadetes_67_12_curated
PLM3-1_170_b2_sep16_scaffold_4763_21
unknown

Not on your lists

15487..16275
DNA (789bp) protein (263aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_4763_trna_1
unknown

Not on your lists

comp(16032..16104)
DNA (73bp)
transferRNA Phe
PLM3-1_170_b2_sep16_scaffold_4763_22
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(16256..17002)
DNA (747bp) protein (249aa)
hypothetical protein bin=bin3_NC10 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
RDD domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_23
R_NC10_66_22, NC10, Bacteria

Not on your lists

17182..18198
DNA (1017bp) protein (339aa)
Putative transcriptional regulator Tax=Saccharomonospora cyanea NA-134 RepID=H5XL80_9PSEU
DeoR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_24
R_NC10_66_22, NC10, Bacteria

Not on your lists

18334..18579
DNA (246bp) protein (82aa)
Putative regulatory protein, FmdB Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMP9_9BACT
regulatory protein, FmdB
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_25
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

19355..20107
DNA (753bp) protein (251aa)
Uncharacterized protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FAE5_CONWI
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM3-1_170_b2_sep16_scaffold_4763_26
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(20462..20890)
DNA (429bp) protein (143aa)
atpC; ATP synthase subunit epsilon, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase epsilon chain Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLY1_9BACT
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_4763_27
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(20926..22056)
DNA (1131bp) protein (377aa)
atpD; ATP synthase subunit beta, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347, ECO:0000313|EMBL:CBE70037.1};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
ATP synthase subunit beta Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLY0_9BACT
PLM3-1_170_b2_sep16_scaffold_4763_28
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(22356..22880)
DNA (525bp) protein (175aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XR5_SOLUE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_4763_29
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(22979..23878)
DNA (900bp) protein (300aa)
atpG; ATP synthase subunit gamma, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase gamma chain Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLX9_9BACT
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Displaying items 1-30 of 37 in total

View Taxonomy