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PLM3-1_170_b2_sep16_scaffold_2014

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_2014_1
unknown

Not on your lists

comp(1..180)
DNA (180bp) protein (60aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2014_2
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

767..3244
DNA (2478bp) protein (826aa)
Putative uncharacterized protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IST1_KORVE
conserved hypothetical protein
Tax=RBG_13_Nitrospirae_39_12_curated
PLM3-1_170_b2_sep16_scaffold_2014_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3570..4559
DNA (990bp) protein (330aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_2014_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

4608..5609
DNA (1002bp) protein (334aa)
Luciferase-like, subgroup bin=GWC2_Methylomirabilis_70_24 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
luciferase like protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3-1_170_b2_sep16_scaffold_2014_5
unknown

Not on your lists

5606..5698
DNA (93bp) protein (31aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2014_6
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5695..7155
DNA (1461bp) protein (487aa)
pyruvate carboxylase (EC:6.4.1.1)
Oxaloacetate decarboxylase bin=GWD2_Deltaproteobacteria_55_8 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_2014_7
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7189..7716
DNA (528bp) protein (176aa)
Carboxymuconolactone decarboxylase Tax=Cupriavidus sp. HPC(L) RepID=V2IW29_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_2014_8
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7821..8912
DNA (1092bp) protein (364aa)
phosphoglycerate dehydrogenase (EC:1.1.1.95)
Putative Phosphoglycerate dehydrogenase bin=GWF2_Methylomirabilis_70_14 species=Hyphomicrobium sp. genus=Hyphomicrobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_2014_9
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9023..10012
DNA (990bp) protein (330aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_2014_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10173..10622)
DNA (450bp) protein (150aa)
Amidohydrolase family protein bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_2014_11
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11319..12155)
DNA (837bp) protein (279aa)
Alpha/beta hydrolase fold Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B630_HERA2
alpha/beta hydrolase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_2014_12
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12312..13199)
DNA (888bp) protein (296aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI0003797ED6
Uncharacterized protein {ECO:0000313|EMBL:ETX01106.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_2014_13
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13307..14287)
DNA (981bp) protein (327aa)
Aldo/keto reductase Tax=Leptospirillum ferrodiazotrophum RepID=C6HY18_9BACT
aldo/keto reductase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_2014_14
Paenibacillus sabinae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14336..15412)
DNA (1077bp) protein (359aa)
UPI0003D68BA0 related cluster Tax=unknown RepID=UPI0003D68BA0
luciferase-like monooxygenase
Luciferase-like monooxygenase {ECO:0000313|EMBL:AHV95662.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sabinae T27.;"
PLM3-1_170_b2_sep16_scaffold_2014_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15647..16471)
DNA (825bp) protein (275aa)
Uncharacterized protein Tax=Magnetospirillum sp. SO-1 RepID=M2YCA4_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_2014_16
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(16531..17376)
DNA (846bp) protein (282aa)
hypothetical protein Tax=Streptomyces sp. R1-NS-10 RepID=UPI0003653C20
beta-lactamase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM3-1_170_b2_sep16_scaffold_2014_17
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18204..18659
DNA (456bp) protein (152aa)
UPI0002776920 related cluster bin=GWD2_Deltaproteobacteria_55_8 species=Marinobacter sp. BSs20148 genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
uncharacterized protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_2014_18
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18837..19814)
DNA (978bp) protein (326aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TPK7_9CHLR
D-isomer specific 2-hydroxyacid dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_2014_19
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19990..20964
DNA (975bp) protein (325aa)
Uncharacterized protein bin=GWC2_Syntrophus__56_31 species=Ralstonia sp. PBA genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=GWC2_Syntrophus_56_31_curated
PLM3-1_170_b2_sep16_scaffold_2014_20
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21200..21652
DNA (453bp) protein (151aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1YIV9_9BACT
hypothetical protein
Tax=GWC2_Syntrophus_56_31_curated
PLM3-1_170_b2_sep16_scaffold_2014_21
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21663..22310
DNA (648bp) protein (216aa)
Putative uncharacterized protein bin=GWC2_Syntrophus__56_31 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=GWC2_Syntrophus_56_31_curated
PLM3-1_170_b2_sep16_scaffold_2014_22
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22249..23130
DNA (882bp) protein (294aa)
Putative uncharacterized protein bin=GWC2_Syntrophus__56_31 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=GWC2_Syntrophus_56_31_curated
PLM3-1_170_b2_sep16_scaffold_2014_23
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23374..24429
DNA (1056bp) protein (352aa)
Tartrate dehydrogenase Tax=Ralstonia pickettii DTP0602 RepID=U3QD09_RALPI
tartrate dehydrogenase
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM3-1_170_b2_sep16_scaffold_2014_24
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24629..25042
DNA (414bp) protein (138aa)
PduO protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003824AC3
Uncharacterized protein {ECO:0000313|EMBL:ETX02175.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_2014_25
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25425..25562
DNA (138bp) protein (46aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX00366.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
PLM3-1_170_b2_sep16_scaffold_2014_26
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25848..26138)
DNA (291bp) protein (97aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKD7_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_2014_27
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26148..26408)
DNA (261bp) protein (87aa)
Prevent-host-death protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKD8_9BACT
prevent-host-death protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_2014_28
unknown

Not on your lists

26539..26664
DNA (126bp) protein (42aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2014_29
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

26952..27101
DNA (150bp) protein (50aa)
S23 ribosomal protein bin=GWC2_Ignavibacteria_38_9 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
PLM3-1_170_b2_sep16_scaffold_2014_30
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27611..28639)
DNA (1029bp) protein (343aa)
UPI0002776920 related cluster bin=GWD2_Deltaproteobacteria_55_8 species=Marinobacter sp. BSs20148 genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Displaying items 1-30 of 37 in total

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