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PLM3-1_170_b2_sep16_scaffold_226

Search features with annotation key words

Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_226_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2..2047)
DNA (2046bp) protein (682aa)
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_226_2
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2138..4261)
DNA (2124bp) protein (708aa)
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_226_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4324..4569)
DNA (246bp) protein (82aa)
DNA gyrase subunit B bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
gyrB; DNA gyrase subunit B
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_226_4
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4809..5519
DNA (711bp) protein (237aa)
cobS; cobalamin 5'-phosphate synthase (EC:2.7.8.26)
Cobalamin synthase bin=GWD2_Deltaproteobacteria_55_8 species=Dethiosulfovibrio peptidovorans genus=Dethiosulfovibrio taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_226_5
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5828..6562
DNA (735bp) protein (245aa)
Predicted protein bin=GWD2_Deltaproteobacteria_55_8 species=Oxalobacter formigenes genus=Oxalobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
TonB-like protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_226_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7010..9088
DNA (2079bp) protein (693aa)
TonB-dependent siderophore receptor bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
tonB dependent receptor family protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_226_7
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

9100..10686
DNA (1587bp) protein (529aa)
cobQ; cobyric acid synthase (EC:6.3.5.10)
cobyric acid synthase Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AD04
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028, ECO:0000313|EMBL:CBK42365.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3-1_170_b2_sep16_scaffold_226_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10716..11231
DNA (516bp) protein (172aa)
Uncharacterized protein Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AM00_IGNAJ
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_226_9
BJP_08E140C01_Syntrophobacterales_43_19, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11441..12157)
DNA (717bp) protein (239aa)
Tax=BJP_08E140C01_Syntrophobacterales_43_19
PLM3-1_170_b2_sep16_scaffold_226_10
BJP_08E140C01_Syntrophobacterales_43_19, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12165..12884)
DNA (720bp) protein (240aa)
Uncharacterized protein Tax=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) RepID=A4YCF2_SHEPC
hypothetical protein
Tax=BJP_08E140C01_Syntrophobacterales_43_19
PLM3-1_170_b2_sep16_scaffold_226_11
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13299..13766)
DNA (468bp) protein (156aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_226_12
unknown

Not on your lists

14099..14314
DNA (216bp) protein (72aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_226_13
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14934..15953)
DNA (1020bp) protein (340aa)
short-chain specific acyl-CoA dehydrogenase (EC:1.3.99.-)
Acyl-CoA dehydrogenase, short-chain specific bin=GWD2_Deltaproteobacteria_55_8 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_226_14
unknown

Not on your lists

16159..16326
DNA (168bp) protein (56aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_226_15

Not on your lists

comp(16313..16711)
DNA (399bp) protein (133aa)
Uncharacterized protein Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HF76_METFS
Marine sediment metagenome DNA, contig: S01H1_L01724 {ECO:0000313|EMBL:GAF84086.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_226_16
GWA2_Nitrospirae_42_11_curated, Nitrospirae, Bacteria

Not on your lists

comp(16704..17033)
DNA (330bp) protein (110aa)
Nucleotidyltransferase domain protein bin=GWB2_Proteobacteria_55_19 species=Methanoregula formicica genus=Methanoregula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
nucleotidyltransferase
Tax=GWA2_Nitrospirae_42_11_curated
PLM3-1_170_b2_sep16_scaffold_226_17
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17170..18150)
DNA (981bp) protein (327aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_226_18
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(18296..18661)
DNA (366bp) protein (122aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
mRNA interferase Tax=Microcystis aeruginosa PCC 7806 RepID=A8YDJ1_MICAE
PemK-like protein
PLM3-1_170_b2_sep16_scaffold_226_19
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18648..18845)
DNA (198bp) protein (66aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_226_20
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19089..20069)
DNA (981bp) protein (327aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_226_21
Nostoc sp. PCC 7524, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(20314..20742)
DNA (429bp) protein (143aa)
Uncharacterized protein Tax=Nostoc sp. (strain ATCC 29411 / PCC 7524) RepID=K9QUM1_NOSS7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY48487.1}; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. (strain ATCC 29411 / PCC 7524).;"
PLM3-1_170_b2_sep16_scaffold_226_22
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20742..20954)
DNA (213bp) protein (71aa)
hypothetical protein Tax=Scytonema hofmanni RepID=UPI00034A9CB0
Uncharacterized protein {ECO:0000313|EMBL:ETW99000.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
PLM3-1_170_b2_sep16_scaffold_226_23
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21298..22446)
DNA (1149bp) protein (383aa)
Acyl-CoA dehydrogenases bin=GWD2_Deltaproteobacteria_55_8 species=uncultured nuHF2 cluster bacterium HF0500_39O04 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
putative acyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_226_24
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22788..23567)
DNA (780bp) protein (260aa)
Short-chain dehydrogenase/reductase SDR bin=GWD2_Deltaproteobacteria_55_8 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
3-hydroxyacyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_226_25
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23790..24875
DNA (1086bp) protein (362aa)
Peptidase S1C, Do bin=GWD2_Deltaproteobacteria_55_8 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
degP-2; periplasmic trypsin-like serine protease lipoprotein DegP
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_226_26
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25166..25939)
DNA (774bp) protein (258aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_226_27
endosymbiont of Tevnia jerichonana, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26158..27030)
DNA (873bp) protein (291aa)
Fructose-bisphosphate aldolase class 1 Tax=sulfur-oxidizing symbionts RepID=G2DFK7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EGW53716.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Tevnia jerichonana (vent Tica).;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_226_28
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(27152..28249)
DNA (1098bp) protein (366aa)
Metal-dependent hydrolase Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HCV4_METFS
metal-dependent hydrolase
Metal-dependent hydrolase {ECO:0000313|EMBL:AGB01621.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP).;"
PLM3-1_170_b2_sep16_scaffold_226_29

Not on your lists

comp(28827..30278)
DNA (1452bp) protein (484aa)
ina; M6 family metalloprotease domain-containing protein (EC:3.4.24.-)
hypothetical protein Tax=Zavarzinella formosa RepID=UPI0002D2D537
Uncharacterized protein {ECO:0000313|EMBL:KKN29948.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b2_sep16_scaffold_226_30
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(30404..31204)
DNA (801bp) protein (267aa)
hypothetical protein Tax=Pseudanabaena sp. PCC 6802 RepID=UPI000375BB5B
lipase class 3
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
Displaying items 1-30 of 79 in total

View Taxonomy