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PLM3-1_170_b2_sep16_scaffold_543

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_543_1
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..566
DNA (564bp) protein (188aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
transposase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_543_2
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

1068..1496
DNA (429bp) protein (143aa)
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
PLM3-1_170_b2_sep16_scaffold_543_3
unknown

Not on your lists

1506..1655
DNA (150bp) protein (50aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_543_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1652..1936
DNA (285bp) protein (95aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ98_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_543_5
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

1929..2189
DNA (261bp) protein (87aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ99_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67464.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_543_6
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2186..3172
DNA (987bp) protein (329aa)
Alpha/beta hydrolase fold Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IG07_XANP2
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold {ECO:0000313|EMBL:ABS66950.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
PLM3-1_170_b2_sep16_scaffold_543_7
Shewanella sp. HN-41, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3224..3634
DNA (411bp) protein (137aa)
Putative uncharacterized protein Tax=Shewanella sp. HN-41 RepID=F7RRY2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EGM68788.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp. HN-41.;"
glutathione-dependent formaldehyde-activating protein
PLM3-1_170_b2_sep16_scaffold_543_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3873..4964)
DNA (1092bp) protein (364aa)
Reactivating factor for ethanolamine ammonia lyase bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_543_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5136..5396)
DNA (261bp) protein (87aa)
Amidase-related protein bin=GWD2_Deltaproteobacteria_55_8 species=Halalkalicoccus jeotgali genus=Halalkalicoccus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
acetamidase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM3-1_170_b2_sep16_scaffold_543_10
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

5722..6795
DNA (1074bp) protein (358aa)
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M7Q8_GEODF
Fis family transcriptional regulator
Tax=RBG_16_Acidobacteria_68_9_curated
PLM3-1_170_b2_sep16_scaffold_543_11
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

6805..7374
DNA (570bp) protein (190aa)
hypothetical protein Tax=Pseudomonas luteola RepID=UPI0002ECE3F1
transcriptional regulator
Tax=RBG_16_Acidobacteria_68_9_curated
PLM3-1_170_b2_sep16_scaffold_543_12
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8096..8827
DNA (732bp) protein (244aa)
Uncharacterized protein Tax=Asticcacaulis sp. AC466 RepID=V4QTK7_9CAUL
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_543_13
CG_PER_01, Peregrinibacteria, Bacteria

Not on your lists

8919..9806
DNA (888bp) protein (296aa)
Tax=CG_PER_01
PLM3-1_170_b2_sep16_scaffold_543_14
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9843..10427
DNA (585bp) protein (195aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI00036C566D
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_543_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10819..12234
DNA (1416bp) protein (472aa)
hypothetical protein bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_543_16
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12496..13485
DNA (990bp) protein (330aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_543_17
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13877..15880
DNA (2004bp) protein (668aa)
Putative two-component hybrid sensor and regulator bin=GWD2_Deltaproteobacteria_55_8 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
two-component hybrid sensor and regulator
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_543_18
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16119..16865)
DNA (747bp) protein (249aa)
Short chain dehydrogenase Tax=Marinobacter algicola DG893 RepID=A6EZZ8_9ALTE
yxbG; oxidoreductase yxbG
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_543_19
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17019..18044)
DNA (1026bp) protein (342aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_543_20
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18123..18284
DNA (162bp) protein (54aa)
lactoylglutathione lyase (EC:4.4.1.5)
Lactoylglutathione lyase bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_543_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(18321..19394)
DNA (1074bp) protein (358aa)
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b2_sep16_scaffold_543_22
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19607..20431
DNA (825bp) protein (275aa)
4Fe-4S ferredoxin, iron-sulfur binding protein Tax=Plesiocystis pacifica SIR-1 RepID=A6G711_9DELT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_543_23
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20443..20916
DNA (474bp) protein (158aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin3_NC10 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_543_24
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20998..21933
DNA (936bp) protein (312aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_543_25
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21993..22754)
DNA (762bp) protein (254aa)
OmpA/MotB domain-containing protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
OmpA/MotB domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_543_26
CSP1_5_NC10, NC10, Bacteria

Not on your lists

23110..26496
DNA (3387bp) protein (1129aa)
2-acylglycerophosphoethanolamine acyltransferase; K05939 acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20] bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
2-acylglycerophosphoethanolamine acyltransferase
Tax=CSP1_5_NC10
Displaying 26 items

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