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PLM3-1_170_b2_sep16_scaffold_1396

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1396_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(244..1212)
DNA (969bp) protein (323aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Rhizobium sp. CF080 genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
family 3 extracellular solute-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1396_2
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1243..2397)
DNA (1155bp) protein (385aa)
Uncharacterized protein Tax=Sorangium cellulosum So0157-2 RepID=S4XRC5_SORCE
hypothetical protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_1396_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2489..3613)
DNA (1125bp) protein (375aa)
Uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Rhizobium sp. CF080 genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1396_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3687..4127)
DNA (441bp) protein (147aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1396_5
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4296..4994)
DNA (699bp) protein (233aa)
Glutathione S-transferase, C-terminal domain protein 4 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HUR8_ACHXA
glutathione S-transferase
Glutathione S-transferase, C-terminal domain protein 4 {ECO:0000313|EMBL:ADP16183.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
PLM3-1_170_b2_sep16_scaffold_1396_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5146..6156)
DNA (1011bp) protein (337aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1396_7
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6249..8492)
DNA (2244bp) protein (748aa)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein bin=GWD2_Deltaproteobacteria_55_8 species=Desulfotomaculum reducens genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
putative oxidoreductase molybdopterin binding subunit
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_1396_8
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

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9343..9897
DNA (555bp) protein (185aa)
RNA polymerase ECF-type sigma factor, putative Tax=Oleispira antarctica RB-8 RepID=R4YSD9_OLEAN
RNA polymerase
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM3-1_170_b2_sep16_scaffold_1396_9
unknown

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9905..10219
DNA (315bp) protein (105aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1396_10
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10216..10656
DNA (441bp) protein (147aa)
Uncharacterized protein {ECO:0000313|EMBL:KJV09978.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
PLM3-1_170_b2_sep16_scaffold_1396_11

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10787..12001
DNA (1215bp) protein (405aa)
hypothetical protein Tax=Methylomonas sp. MK1 RepID=UPI00036AA173
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49450.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Macrolide-specific efflux protein MacA
PLM3-1_170_b2_sep16_scaffold_1396_12
Micavibrio aeruginosavorus, Micavibrio, Alphaproteobacteria, Proteobacteria, Bacteria

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11998..13938
DNA (1941bp) protein (647aa)
phosphonate-transporting ATPase (EC:3.6.3.28)
Macrolide export ATP-binding/permease protein MacB {ECO:0000256|HAMAP-Rule:MF_01720}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01720};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Micavibrio.;" source="Micavibrio aeruginosavorus (strain ARL-13).;"
ABC transporter family protein Tax=Micavibrio aeruginosavorus (strain ARL-13) RepID=G2KS77_MICAA
PLM3-1_170_b2_sep16_scaffold_1396_13
Micavibrio aeruginosavorus, Micavibrio, Alphaproteobacteria, Proteobacteria, Bacteria

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13947..15293
DNA (1347bp) protein (449aa)
Efflux transporter, outer membrane factor (OMF) lipo, NodT family protein Tax=Micavibrio aeruginosavorus (strain ARL-13) RepID=G2KS78_MICAA
efflux transporter outer membrane protein
Efflux transporter, outer membrane factor (OMF) lipo, NodT family protein {ECO:0000313|EMBL:AEP08761.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Micavibrio.;" source="Micavibrio aeruginosavorus (strain ARL-13).;"
PLM3-1_170_b2_sep16_scaffold_1396_14
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15428..16402
DNA (975bp) protein (325aa)
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic component-like protein bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
exported protein of unknown function
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b2_sep16_scaffold_1396_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16539..18014
DNA (1476bp) protein (492aa)
pyruvate carboxylase (EC:6.4.1.1)
Oxaloacetate decarboxylase bin=GWD2_Deltaproteobacteria_55_8 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b2_sep16_scaffold_1396_16
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18026..18550
DNA (525bp) protein (175aa)
Uncharacterized protein Tax=Ralstonia syzygii R24 RepID=G3A6H2_9RALS
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
PLM3-1_170_b2_sep16_scaffold_1396_17
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

18873..19235
DNA (363bp) protein (121aa)
hypothetical protein Tax=Zavarzinella formosa RepID=UPI0002DC0C6F
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EDY19935.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Glyoxalase/bleomycin resistance protein/dioxygenase
PLM3-1_170_b2_sep16_scaffold_1396_18
CSP1_5_NC10, NC10, Bacteria

Not on your lists

19369..19707
DNA (339bp) protein (113aa)
id=14429357 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
Tax=CSP1_5_NC10
PLM3-1_170_b2_sep16_scaffold_1396_19
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19863..21698)
DNA (1836bp) protein (612aa)
GTP-binding protein TypA/BipA bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
GTP-binding protein TypA
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b2_sep16_scaffold_1396_20
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21915..23654
DNA (1740bp) protein (580aa)
ABC transporter, ATP-binding/membrane protein bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ABC transporter ATP-binding protein/permease
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_170_b2_sep16_scaffold_1396_21
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23655..25472
DNA (1818bp) protein (606aa)
ABC-type multidrug transport system component bin=GWD2_Deltaproteobacteria_55_8 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ABC-type multidrug transport system component
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b2_sep16_scaffold_1396_22
uncultured gamma proteobacterium, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25620..26378
DNA (759bp) protein (253aa)
Hypothetical conserved protein Tax=uncultured gamma proteobacterium RepID=H5SAD6_9GAMM
Hypothetical conserved protein {ECO:0000313|EMBL:BAL53122.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; environmental samples.;" source="uncultured gamma proteobacterium.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_1396_23
unknown

Not on your lists

26384..26707
DNA (324bp) protein (108aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1396_24
Anaerobaculum mobile, Anaerobaculum, Synergistales, Synergistia, Synergistetes, Bacteria

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26704..27135
DNA (432bp) protein (144aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Anaerobaculum.;" source="Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA).;"
Ribonuclease VapC Tax=Anaerobaculum mobile (strain ATCC BAA-54 / DSM 13181 / NGA) RepID=I4BWR1_ANAMD
nucleic acid-binding protein, contains PIN domain
PLM3-1_170_b2_sep16_scaffold_1396_25
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

27514..27921
DNA (408bp) protein (136aa)
hypothetical protein Tax=unclassified candidate division KSB1 RepID=UPI00037FF72A
amino acid ABC transporter ATP-binding protein
Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
Displaying 25 items

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