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PLM3-1_170_b2_sep16_scaffold_1077

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1077_1
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(1..795)
DNA (795bp) protein (265aa)
Putative proteasome component Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLF1_9BACT
proteasome component
Putative proteasome component {ECO:0000313|EMBL:CBE67817.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_1077_2
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(868..2691)
DNA (1824bp) protein (608aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLF0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CBE67816.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_1077_3
unknown

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2972..3145
DNA (174bp) protein (58aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1077_4
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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3331..4302
DNA (972bp) protein (324aa)
pdhA; pyruvate dehydrogenase (Lipoamide) E1 component alpha chain (EC:1.2.4.1)
Similar to pyruvate dehydrogenase (Lipoamide) E1 component alpha chain {ECO:0000313|EMBL:CBE67815.1}; EC=1.2.4.1 {ECO:0000313|EMBL:CBE67815.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Similar to pyruvate dehydrogenase (Lipoamide) E1 component alpha chain Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLE9_9BACT
PLM3-1_170_b2_sep16_scaffold_1077_5
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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4501..5472
DNA (972bp) protein (324aa)
bfmBAB; 2-oxoisovalerate dehydrogenase subunit beta (Branched-chain alpha-keto acid dehydrogenase E1 component beta chain) (BCKDH E1-beta) (EC:1.2.4.4)
2-oxoisovalerate dehydrogenase subunit beta (Branched-chain alpha-keto acid dehydrogenase E1 component beta chain) (BCKDH E1-beta) {ECO:0000313|EMBL:CBE67814.1}; EC=1.2.4.4 {ECO:0000313|EMBL:CBE67814.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
2-oxoisovalerate dehydrogenase subunit beta (Branched-chain alpha-keto acid dehydrogenase E1 component beta chain) (BCKDH E1-beta) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLE8_9BACT
PLM3-1_170_b2_sep16_scaffold_1077_6
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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5580..6728
DNA (1149bp) protein (383aa)
sucB; 2-oxoglutarate dehydrogenase complex E2 component (EC:2.3.1.61)
Similar to 2-oxoglutarate dehydrogenase complex E2 component {ECO:0000313|EMBL:CBE67813.1}; EC=2.3.1.61 {ECO:0000313|EMBL:CBE67813.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Similar to 2-oxoglutarate dehydrogenase complex E2 component Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLE7_9BACT
PLM3-1_170_b2_sep16_scaffold_1077_7
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(6909..7088)
DNA (180bp) protein (60aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML93_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67759.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_1077_8
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(7103..7300)
DNA (198bp) protein (66aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML94_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67760.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_1077_9
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(7322..7828)
DNA (507bp) protein (169aa)
Molybdenum cofactor biosynthesis protein B Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML95_9BACT
moaB; molybdenum cofactor biosynthesis protein MoaB
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443, ECO:0000313|EMBL:CBE67761.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_1077_10
unknown

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comp(7846..8028)
DNA (183bp) protein (61aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1077_11
CSP1_5_NC10, NC10, Bacteria

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comp(8132..8947)
DNA (816bp) protein (272aa)
hypothetical protein; K03593 ATP-binding protein involved in chromosome partitioning bin=bin3_NC10 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin3_NC10 organism_group=NC10
putative ATPase of the MinD/MRP superfamily
Tax=CSP1_5_NC10
PLM3-1_170_b2_sep16_scaffold_1077_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(9109..9663)
DNA (555bp) protein (185aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
GTP cyclohydrolase I Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00037E0358
PLM3-1_170_b2_sep16_scaffold_1077_13
R_NC10_66_22, NC10, Bacteria

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comp(9869..10456)
DNA (588bp) protein (196aa)
NUDIX hydrolase bin=bin3_NC10 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
DNA mismatch repair protein MutT
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1077_14
unknown

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comp(10461..10679)
DNA (219bp) protein (73aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1077_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(10676..11008)
DNA (333bp) protein (111aa)
alkyl hydroperoxide reductase bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alkyl hydroperoxide reductase
Tax=CSP1_6_Rokubacteria
PLM3-1_170_b2_sep16_scaffold_1077_16
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

11343..11828
DNA (486bp) protein (162aa)
Putative F420-dependent enzyme Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TLS3_9CHLR
Putative F420-dependent enzyme {ECO:0000313|EMBL:EFH86723.1}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
PPOX class putative F420-dependent enzyme
PLM3-1_170_b2_sep16_scaffold_1077_17
unknown

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comp(11705..11971)
DNA (267bp) protein (89aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1077_18
R_NC10_66_22, NC10, Bacteria

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12054..13298
DNA (1245bp) protein (415aa)
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit Tax=Nitrolancetus hollandicus Lb RepID=I4EHA9_9CHLR
cofG; FO synthase subunit 1
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1077_19
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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13300..14556
DNA (1257bp) protein (419aa)
cofH; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase (EC:2.5.1.-)
FO synthase subunit 2 bin=GWF2_Methylomirabilis_70_14 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3-1_170_b2_sep16_scaffold_1077_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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14644..15306
DNA (663bp) protein (221aa)
NADPH-dependent F420 reductase Tax=uncultured Acidobacteria bacterium RepID=H5SDD4_9BACT
NADPH-dependent F420 reductase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b2_sep16_scaffold_1077_21
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

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15303..16241
DNA (939bp) protein (313aa)
LPPG domain-containing protein containing protein
2-phospho-L-lactate transferase bin=GWF2_Methylomirabilis_70_14 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM3-1_170_b2_sep16_scaffold_1077_22
R_NC10_66_22, NC10, Bacteria

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16238..16903
DNA (666bp) protein (222aa)
phospholactate guanylyltransferase (EC:2.7.7.-); K14941 2-phospho-L-lactate guanylyltransferase [EC:2.7.7.68] bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1077_23
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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16884..17648
DNA (765bp) protein (255aa)
coenzyme F420-0 gamma-glutamyl ligase; K12234 coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
coenzyme F420-0 gamma-glutamyl ligase (EC:6.3.2.-)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3-1_170_b2_sep16_scaffold_1077_24
R_Pseudomonas_63_210, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17680..17988)
DNA (309bp) protein (103aa)
dioxygenase, ferredoxin subunit bin=bin3_NC10 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin3_NC10 organism_group=NC10
ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase
Tax=RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_curated
PLM3-1_170_b2_sep16_scaffold_1077_25
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(18047..18631)
DNA (585bp) protein (195aa)
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI0003638F9D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE67764.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_1077_26
unknown

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comp(18690..18983)
DNA (294bp) protein (98aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1077_27
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(18988..20223)
DNA (1236bp) protein (412aa)
6-phosphofructokinase (EC:2.7.1.11)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01979}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01979};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|HAMAP-Rule:MF_01979}; PPi-dependent phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_01979}; Pyrophosphate-dependent 6-phosphofructose-1-kinase {ECO:0000256|HAMAP-Rule:MF_01979}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
6-phosphofructokinase Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI0003627BCA
PLM3-1_170_b2_sep16_scaffold_1077_28
uncultured myxobacterium HF0200_01L06, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(20426..20770)
DNA (345bp) protein (115aa)
Ferredoxin Tax=uncultured myxobacterium HF0200_01L06 RepID=E7C3I0_9DELT
Ferredoxin {ECO:0000313|EMBL:ADI22004.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; environmental samples.;" source="uncultured myxobacterium HF0200_01L06.;"
4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein
PLM3-1_170_b2_sep16_scaffold_1077_29
unknown

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21040..21180
DNA (141bp) protein (47aa)

This feature has no annotations

Displaying 29 items

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