ggKbase home page

PLM3-1_170_b2_sep16_scaffold_1491

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_1491_1
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(114..482)
DNA (369bp) protein (123aa)
Anti-sigma-factor antagonist bin=GWC2_ACD39_50_8 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_ACD39_50_8 organism_group=ACD39
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1491_2
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(502..951)
DNA (450bp) protein (150aa)
Protein MraZ Tax=Candidatus Methylomirabilis oxyfera RepID=D5MI65_9BACT
mraZ; protein mraZ
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_1491_3
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(1130..1978)
DNA (849bp) protein (283aa)
panC; pantothenate synthetase (Pantoate--beta-alanine ligase) (EC:6.3.2.1)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247609}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247611};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247610}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Pantothenate synthetase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MI66_9BACT
PLM3-1_170_b2_sep16_scaffold_1491_4
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(2034..2876)
DNA (843bp) protein (281aa)
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase (Ketopantoate hydroxymethyltransferase) (KPHMT) (EC:2.1.2.11)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
3-methyl-2-oxobutanoate hydroxymethyltransferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MI67_9BACT
PLM3-1_170_b2_sep16_scaffold_1491_5
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(3081..3725)
DNA (645bp) protein (215aa)
Deoxynucleoside kinase family protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MI68_9BACT
Deoxynucleoside kinase family protein
Deoxynucleoside kinase family protein {ECO:0000313|EMBL:CBE69361.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_1491_6
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(3746..4267)
DNA (522bp) protein (174aa)
folK; 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) (EC:2.7.6.3)
7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) {ECO:0000313|EMBL:CBE69362.1}; EC=2.7.6.3 {ECO:0000313|EMBL:CBE69362.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MI69_9BACT
PLM3-1_170_b2_sep16_scaffold_1491_7
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(4264..4626)
DNA (363bp) protein (121aa)
dihydroneopterin aldolase (EC:4.1.2.25)
hypothetical protein Tax=Orenia marismortui RepID=UPI00036984EA
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b2_sep16_scaffold_1491_8
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(4810..5988)
DNA (1179bp) protein (393aa)
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1)
Putative PLP-dependent aminotransferase, putative aspartate aminotransferase {ECO:0000313|EMBL:CBE69363.1}; EC=2.6.1.- {ECO:0000313|EMBL:CBE69363.1};; EC=2.6.1.1 {ECO:0000313|EMBL:CBE69363.1};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Putative PLP-dependent aminotransferase, putative aspartate aminotransferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIK6_9BACT
PLM3-1_170_b2_sep16_scaffold_1491_9
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(6179..6937)
DNA (759bp) protein (253aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIK7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE69364.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM3-1_170_b2_sep16_scaffold_1491_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(6990..7796)
DNA (807bp) protein (269aa)
dapB; dihydrodipicolinate reductase (DHPR) (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
4-hydroxy-tetrahydrodipicolinate reductase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIK8_9BACT
PLM3-1_170_b2_sep16_scaffold_1491_11
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(7849..8733)
DNA (885bp) protein (295aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
4-hydroxy-tetrahydrodipicolinate synthase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIK9_9BACT
PLM3-1_170_b2_sep16_scaffold_1491_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(8828..9652)
DNA (825bp) protein (275aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Diaminopimelate epimerase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIL0_9BACT
PLM3-1_170_b2_sep16_scaffold_1491_13
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(9727..10986)
DNA (1260bp) protein (420aa)
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Diaminopimelate decarboxylase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MIL1_9BACT
PLM3-1_170_b2_sep16_scaffold_1491_14
unknown

Not on your lists

comp(11201..11602)
DNA (402bp) protein (134aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_1491_15
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(11702..12322)
DNA (621bp) protein (207aa)
Putative Fibronectin, type III Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHS2_9BACT
Fibronectin, type III
Putative Fibronectin, type III {ECO:0000313|EMBL:CBE67205.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Displaying 15 items

View Taxonomy