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PLM3-1_200_b1_sep16_scaffold_3526

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_200_b1_sep16_scaffold_3526_1
GWC2_Deltaproteobacteria_42_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..214)
DNA (213bp) protein (71aa)
hypothetical protein Tax=Pseudoalteromonas haloplanktis RepID=UPI0002F00110
putative lipoprotein
Tax=GWC2_Deltaproteobacteria_42_11_curated
PLM3-1_200_b1_sep16_scaffold_3526_2
BJP_08E140C01_Spirochaeta_53_29, Spirochaeta, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

Not on your lists

321..650
DNA (330bp) protein (110aa)
Transposase IS3/IS911 family protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLW9_SIDLE
transposase IS3/IS911 family protein
Tax=BJP_08E140C01_Spirochaeta_53_29
PLM3-1_200_b1_sep16_scaffold_3526_3
RIFOXYD2_FULL_Sideroxydans_59_7_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

647..1510
DNA (864bp) protein (288aa)
Integrase catalytic region Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CLX0_SIDLE
Integrase catalytic region
Tax=RIFOXYD2_FULL_Sideroxydans_59_7_curated
PLM3-1_200_b1_sep16_scaffold_3526_4
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(1625..1897)
DNA (273bp) protein (91aa)
Xre family DNA-binding protein bin=CNBR_ACIDO species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA-binding protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_200_b1_sep16_scaffold_3526_5
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(1890..2201)
DNA (312bp) protein (104aa)
hypothetical protein bin=CNBR_ACIDO species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_200_b1_sep16_scaffold_3526_6
uncultured gamma proteobacterium, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2352..3074)
DNA (723bp) protein (241aa)
Short-chain dehydrogenase/reductase Tax=uncultured gamma proteobacterium RepID=H5SE57_9GAMM
Short-chain dehydrogenase/reductase {ECO:0000313|EMBL:BAL54443.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; environmental samples.;" source="uncultured gamma proteobacterium.;"
3-ketoacyl-ACP reductase
PLM3-1_200_b1_sep16_scaffold_3526_7
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3329..4021)
DNA (693bp) protein (231aa)
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase 1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=PIMT1_POLSJ
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3-1_200_b1_sep16_scaffold_3526_8
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4720..5424)
DNA (705bp) protein (235aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein Tax=Dyella japonica RepID=UPI00036D8166
methionine sulfoxide reductase A
PLM3-1_200_b1_sep16_scaffold_3526_9
RBG_16_Gammaproteobacteria_62_13__curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5706..5957)
DNA (252bp) protein (84aa)
Putative integral membrane protein (DUF2282) Tax=Pseudomonas sp. GM21 RepID=J3F2V5_9PSED
putative uncharacterized protein
Tax=RBG_16_Gammaproteobacteria_62_13__curated
PLM3-1_200_b1_sep16_scaffold_3526_10
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6144..8459)
DNA (2316bp) protein (772aa)
hypothetical protein Tax=Flexithrix dorotheae RepID=UPI000361AFB7
methionine synthase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM3-1_200_b1_sep16_scaffold_3526_11
Sideroxydans lithotrophicus, Sideroxydans, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9054..9599)
DNA (546bp) protein (182aa)
Putative uncharacterized protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CQQ4_SIDLE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE11290.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Sideroxydans.;" source="Sideroxydans lithotrophicus (strain ES-1).;"
PLM3-1_200_b1_sep16_scaffold_3526_12
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10047..10355)
DNA (309bp) protein (103aa)
4Fe-4S ferredoxin, iron-sulfur binding protein Tax=Plesiocystis pacifica SIR-1 RepID=A6FXK0_9DELT
4Fe-4S ferredoxin, iron-sulfur binding protein {ECO:0000313|EMBL:EDM81588.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
4Fe-4S ferredoxin
Displaying 12 items

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