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PLM3-1_200_b2_sep16_scaffold_1705

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_200_b2_sep16_scaffold_1705_1
unknown

Not on your lists

3..119
DNA (117bp) protein (39aa)

This feature has no annotations

PLM3-1_200_b2_sep16_scaffold_1705_2
unknown

Not on your lists

142..594
DNA (453bp) protein (151aa)

This feature has no annotations

PLM3-1_200_b2_sep16_scaffold_1705_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

851..1876
DNA (1026bp) protein (342aa)
Iron-binding periplasmic protein bin=GWD2_Deltaproteobacteria_55_8 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
putative ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_1705_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1888..2784)
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family bin=GWC2_Nitrospirae_57_13 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
LysR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_1705_5
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2956..3345
DNA (390bp) protein (130aa)
PAS fold family bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
response regulator receiver protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_200_b2_sep16_scaffold_1705_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3468..5207
DNA (1740bp) protein (580aa)
Thiamine pyrophosphate enzyme domain protein TPP-binding bin=GWD2_Deltaproteobacteria_55_8 species=Marinobacter algicola genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ilvB; acetolactate synthase large subunit
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_1705_7
unknown

Not on your lists

5279..5434
DNA (156bp) protein (52aa)

This feature has no annotations

PLM3-1_200_b2_sep16_scaffold_1705_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5403..6719)
DNA (1317bp) protein (439aa)
hypothetical protein bin=bin7_NC10_sister species=Azoarcus toluclasticus genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_1705_9
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6788..7072)
DNA (285bp) protein (95aa)
id=1956518 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_1705_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7103..7288)
DNA (186bp) protein (62aa)
id=1956519 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_1705_11
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7404..7949)
DNA (546bp) protein (182aa)
Cornifin-A bin=GWD2_Deltaproteobacteria_55_8 species=Mus musculus genus=Mus taxon_order=Rodentia taxon_class=Mammalia phylum=Chordata tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_1705_12
unknown

Not on your lists

8060..8254
DNA (195bp) protein (65aa)

This feature has no annotations

PLM3-1_200_b2_sep16_scaffold_1705_13
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8430..9239)
DNA (810bp) protein (270aa)
short-chain dehydrogenase/reductase SDR bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_1705_14
unknown

Not on your lists

comp(9272..9424)
DNA (153bp) protein (51aa)

This feature has no annotations

PLM3-1_200_b2_sep16_scaffold_1705_15
CG_Desulfob_01, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9367..10158)
DNA (792bp) protein (264aa)
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
ABC transporter
Tax=CG_Desulfob_01
PLM3-1_200_b2_sep16_scaffold_1705_16
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(10142..11191)
DNA (1050bp) protein (350aa)
Vitamin B12 import system, permease protein BtuC Tax=Candidatus Nitrospira defluvii RepID=D8PGJ2_9BACT
btuC; vitamin B12 import system permease protein BtuC
Vitamin B12 import system, permease protein BtuC {ECO:0000313|EMBL:CBK42379.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3-1_200_b2_sep16_scaffold_1705_17
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11172..12128)
DNA (957bp) protein (319aa)
Periplasmic binding protein bin=GWF2_Methylomirabilis_70_14 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
periplasmic binding protein
Tax=RBG_13_Deltaproteobacteria_61_14_curated
PLM3-1_200_b2_sep16_scaffold_1705_18
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(12137..12682)
DNA (546bp) protein (182aa)
Cobalamin biosynthesis protein CobP Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3AE12_CARHZ
cobP; cobalamin biosynthesis protein CobP
Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
PLM3-1_200_b2_sep16_scaffold_1705_19
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(12698..13810)
DNA (1113bp) protein (371aa)
L-threonine-0-3-phosphate decarboxylase Tax=Geobacter metallireducens RepID=Q39YE4_GEOMG
cobD; L-threonine-0-3-phosphate decarboxylase
Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
PLM3-1_200_b2_sep16_scaffold_1705_20
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(13810..14778)
DNA (969bp) protein (323aa)
Cobalamin biosynthesis protein CobD Tax=Geobacter sp. (strain M21) RepID=C6E673_GEOSM
cobalamin biosynthesis protein CobD
Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
PLM3-1_200_b2_sep16_scaffold_1705_21
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14757..16298)
DNA (1542bp) protein (514aa)
Cobalt-precorrin-3 C17-methyltransferase and adenosylcobyric acid synthase Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EC76_GEOBB
cobalamin biosynthesis protein CobQ
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028, ECO:0000256|SAAS:SAAS00231811}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM3-1_200_b2_sep16_scaffold_1705_22
R_Omnitrophica_45_10b, Omnitrophica, Bacteria

Not on your lists

comp(16295..16408)
DNA (114bp) protein (38aa)
Tax=RIFCSPLOWO2_01_FULL_Omnitrophica_45_10b_curated
Displaying 22 items

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