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PLM3-1_200_b2_sep16_scaffold_2

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_200_b2_sep16_scaffold_2_1
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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223..411
DNA (189bp) protein (63aa)
twitching motility protein PilT bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
twitching motility protein PilT
Tax=CSP1_2_Dadabacteria
PLM3-1_200_b2_sep16_scaffold_2_2
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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428..1426
DNA (999bp) protein (333aa)
Predicted protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Poales taxon_class=Liliopsida phylum=Streptophyta tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
class IV aminotransferase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_2_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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1501..2745
DNA (1245bp) protein (415aa)
PpiC-type peptidyl-prolyl cis-trans isomerase bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
peptidylprolyl cis-trans isomerase, PpiC-type, SurA family
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_2_4
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2814..3830
DNA (1017bp) protein (339aa)
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_2_5
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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3827..5182
DNA (1356bp) protein (452aa)
phosphomannomutase (EC:5.4.2.8)
Phosphomannomutase bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_2_6
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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5187..7727
DNA (2541bp) protein (847aa)
Excinuclease ABC, subunit A bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
uvrA; excinuclease ABC subunit A
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_2_7
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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7903..9135
DNA (1233bp) protein (411aa)
iscS; cysteine desulfurase (EC:2.8.1.7)
cysteine desulfurase Tax=Gemmata obscuriglobus RepID=UPI00016C46B8
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_2_8
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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9157..9486
DNA (330bp) protein (110aa)
Iron-sulfur cluster assembly accessory protein bin=GWD2_Deltaproteobacteria_55_8 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
iron-sulfur cluster assembly accessory protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_2_9
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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9509..10735
DNA (1227bp) protein (409aa)
Cysteine desulfurase bin=GWD2_Deltaproteobacteria_55_8 species=Pleurocapsa minor genus=Pleurocapsa taxon_order=Pleurocapsales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
cysteine desulfurase NifS
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_2_10
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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10742..11197
DNA (456bp) protein (152aa)
Transcriptional regulator, BadM/Rrf2 family bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
BadM/Rrf2 family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_2_11
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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11223..11711
DNA (489bp) protein (163aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_2_12
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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11848..12768
DNA (921bp) protein (307aa)
Lipid A lauroyl acyltransferase, putative bin=GWD2_Deltaproteobacteria_55_8 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Lipid A biosynthesis acyltransferase
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_2_13
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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13265..13552
DNA (288bp) protein (96aa)
Putative uncharacterized protein bin=GWA1_Deltaproteobacteria_52_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_2_14
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(15035..16567)
DNA (1533bp) protein (511aa)
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II (EC:6.2.1.3)
O-succinylbenzoate--CoA ligase bin=GWD2_Deltaproteobacteria_55_8 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_2_15
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(16519..17526)
DNA (1008bp) protein (336aa)
Class II aldolase/adducin family protein bin=GWD2_Deltaproteobacteria_55_8 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
class II aldolase/adducin family protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_2_16
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(17523..19046)
DNA (1524bp) protein (508aa)
aIF-2BI family translation initiation factor (EC:5.3.1.23)
Methylthioribose-1-phosphate isomerase bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_2_17
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19051..19788)
DNA (738bp) protein (246aa)
udp; uridine phosphorylase (EC:2.4.2.3)
Uridine phosphorylase bin=GWD2_Deltaproteobacteria_55_8 species=Acidilobus saccharovorans genus=Acidilobus taxon_order=Acidilobales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_2_18
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(19886..20365)
DNA (480bp) protein (160aa)
MarR family transcriptional regulatory protein bin=GWD2_Deltaproteobacteria_55_8 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
MarR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_2_19
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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20600..22132
DNA (1533bp) protein (511aa)
Trypsin-like serine protease with C-terminal PDZ domain Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DRA9_SINAD
trypsin-like serine protease with C-terminal PDZ domain
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_2_20
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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22321..23010
DNA (690bp) protein (230aa)
TENA/THI-4 protein Tax=Thermoplasmatales archaeon Gpl RepID=T0LY61_9EURY
pyrroloquinoline quinone (coenzyme PQQ) biosynthesis protein C
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_2_21
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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23034..24137
DNA (1104bp) protein (368aa)
Gentisate 1,2-dioxygenase / 1-hydroxy-2-naphthoate dioxygenase Tax=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) RepID=A1T2B5_MYCVP
cupin
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_2_22
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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24156..25133
DNA (978bp) protein (326aa)
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
NMT1/THI5-like domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_2_23
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25166..26785
DNA (1620bp) protein (540aa)
Carboxylyase-related protein bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Vdcc protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_2_24
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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26796..27764
DNA (969bp) protein (323aa)
NAD-dependent epimerase/dehydratase bin=GWD2_Deltaproteobacteria_55_8 species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
NAD-dependent epimerase/dehydratase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_200_b2_sep16_scaffold_2_25
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27914..29002
DNA (1089bp) protein (363aa)
L-iditol 2-dehydrogenase (EC:1.1.1.14)
L-iditol 2-dehydrogenase bin=GWC2_Methylomirabilis_70_16 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_2_26
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

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29142..30287
DNA (1146bp) protein (382aa)
Predicted protein Tax=Naegleria gruberi RepID=D2VDD4_NAEGR
pentapeptide repeat-containing protein
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
PLM3-1_200_b2_sep16_scaffold_2_27
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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30336..30839
DNA (504bp) protein (168aa)
tpx; putative thiol peroxidase (EC:1.11.1.-)
thiol peroxidase Tax=Schlesneria paludicola RepID=UPI00029AAC40
Tax=BJP_IG2069_Desfulfarculales_53_13
PLM3-1_200_b2_sep16_scaffold_2_28
RBG_16_NC10_65_8_curated, NC10, Bacteria

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30868..31425
DNA (558bp) protein (186aa)
DNA-3-methyladenine glycosylase I (EC:3.2.2.20)
DNA-3-methyladenine glycosylase I Tax=Chthoniobacter flavus Ellin428 RepID=B4D1T8_9BACT
Tax=RBG_16_NC10_65_8_curated
PLM3-1_200_b2_sep16_scaffold_2_29
gamma proteobacterium BDW918, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(32607..33794)
DNA (1188bp) protein (396aa)
cytochrome C peroxidase Tax=Spongiibacter tropicus RepID=UPI0003B2EA71
Uncharacterized protein {ECO:0000313|EMBL:EIF42392.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
hypothetical protein
PLM3-1_200_b2_sep16_scaffold_2_30
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(33938..34867)
DNA (930bp) protein (310aa)
Hypothetical secreted protein containing NosD and DUF11 domains Tax=uncultured archaeon RepID=D1JA71_9ARCH
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Displaying items 1-30 of 53 in total

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