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PLM3-1_200_b2_sep16_scaffold_16

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_200_b2_sep16_scaffold_16_1
unknown

Not on your lists

295..558
DNA (264bp) protein (88aa)

This feature has no annotations

PLM3-1_200_b2_sep16_scaffold_16_2
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

559..1740
DNA (1182bp) protein (394aa)
hypothetical protein bin=GWB2_Proteobacteria_55_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
PLM3-1_200_b2_sep16_scaffold_16_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1879..2094
DNA (216bp) protein (72aa)
Putative uncharacterized protein Tax=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) RepID=Q3JC34_NITOC
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_16_4
unknown

Not on your lists

2754..3113
DNA (360bp) protein (120aa)

This feature has no annotations

PLM3-1_200_b2_sep16_scaffold_16_5
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3105..4265)
DNA (1161bp) protein (387aa)
hypothetical protein Tax=Methylosarcina fibrata RepID=UPI000364B17E
transposase IS4
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM3-1_200_b2_sep16_scaffold_16_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4897..5238
DNA (342bp) protein (114aa)
prevent-host-death protein bin=bin5_DeltaP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
prevent-host-death protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_16_7
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5304..5906)
DNA (603bp) protein (201aa)
Thiamine pyrophosphate protein domain protein TPP-binding bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
thiamine pyrophosphate-binding protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_200_b2_sep16_scaffold_16_8
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5906..6409)
DNA (504bp) protein (168aa)
Sulfopyruvate decarboxylase subunit alpha bin=GWD2_Deltaproteobacteria_55_8 species=Methanosaeta thermophila genus=Methanosaeta taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
sulfopyruvate decarboxylase, alpha subunit
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_200_b2_sep16_scaffold_16_9
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6425..7516)
DNA (1092bp) protein (364aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_16_10
unknown

Not on your lists

comp(7513..7713)
DNA (201bp) protein (67aa)

This feature has no annotations

PLM3-1_200_b2_sep16_scaffold_16_11
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7743..8765)
DNA (1023bp) protein (341aa)
Amidohydrolase family protein bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_16_12
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

comp(8820..9659)
DNA (840bp) protein (280aa)
OmpA/MotB domain protein bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
peptidoglycan-binding lipoprotein, OmpA family
Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
PLM3-1_200_b2_sep16_scaffold_16_13
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(9771..10133)
DNA (363bp) protein (121aa)
Putative pterin-4-alpha-carbinolamine dehydratase Tax=Nitrolancetus hollandicus Lb RepID=I4EJU4_9CHLR
phhB; pterin-4-alpha-carbinolamine dehydratase
Tax=RBG_16_Armatimonadetes_67_12_curated
PLM3-1_200_b2_sep16_scaffold_16_14
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10166..10993)
DNA (828bp) protein (276aa)
3-hydroxyisobutyrate dehydrogenase Tax=Xanthomonas oryzae pv. oryzae RepID=B2SRY7_XANOP
3-hydroxyisobutyrate dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_16_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11041..12291)
DNA (1251bp) protein (417aa)
hypothetical protein Tax=Herbaspirillum lusitanum RepID=UPI0003183DD2
hydrolase/M24 family peptidase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_16_16
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12305..13387)
DNA (1083bp) protein (361aa)
Iron-binding periplasmic protein Tax=sediment metagenome RepID=D9PHC2_9ZZZZ
putative ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_16_17
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13398..15098)
DNA (1701bp) protein (567aa)
binding-protein-dependent transport system inner membrane protein; K02011 iron(III) transport system permease protein bin=bin9_gal15 species=Pseudomonas agarici genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
binding-protein-dependent transport systems inner membrane component
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_16_18
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(15132..16178)
DNA (1047bp) protein (349aa)
Reactivating factor for ethanolamine ammonia lyase bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM3-1_200_b2_sep16_scaffold_16_19
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16215..18308)
DNA (2094bp) protein (698aa)
Translation elongation factor G Tax=Geobacter sp. (strain M21) RepID=C6E792_GEOSM
elongation factor G
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_16_20
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18363..19157)
DNA (795bp) protein (265aa)
Type III pantothenate kinase Tax=Geobacter sulfurreducens RepID=COAX_GEOSL
coaX; pantothenate kinase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_16_21
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19169..19999)
DNA (831bp) protein (277aa)
Biotin operon repressor and biotin--acetyl-CoA carboxylase ligase Tax=Geobacter metallireducens RepID=Q39U58_GEOMG
birA; biotin operon repressor and biotin--acetyl-CoA carboxylase ligase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_16_22
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19992..20864)
DNA (873bp) protein (291aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NDC0_DESAR
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_16_23
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(20870..23626)
DNA (2757bp) protein (919aa)
valS; Valyl-tRNA synthetase (Valine--tRNA ligase) (EC:6.1.1.9) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
valS; valyl-tRNA ligase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_16_24
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23631..24152)
DNA (522bp) protein (174aa)
id=2073412 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_16_trna_1
unknown

Not on your lists

24247..24331
DNA (85bp)
transferRNA Leu
PLM3-1_200_b2_sep16_scaffold_16_25
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24441..24782
DNA (342bp) protein (114aa)
Cytochrome C bin=GWD2_Deltaproteobacteria_55_8 species=ACD73 genus=ACD73 taxon_order=ACD73 taxon_class=ACD73 phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
lipoprotein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_16_26
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24779..25486)
DNA (708bp) protein (236aa)
hypothetical protein SclubSA_04243 bin=GWD2_Deltaproteobacteria_55_8 species=SAR324 cluster bacterium SCGC AAA001-C10 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_16_27
unknown

Not on your lists

comp(25626..26051)
DNA (426bp) protein (142aa)

This feature has no annotations

PLM3-1_200_b2_sep16_scaffold_16_28
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26170..27078
DNA (909bp) protein (303aa)
DNA helicase domain protein Tax=uncultured bacterium RepID=H6VUZ7_9BACT
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_16_29
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(27112..28128)
DNA (1017bp) protein (339aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PAL1_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
Displaying items 1-30 of 49 in total

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