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PLM3-1_200_b2_sep16_scaffold_424

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_200_b2_sep16_scaffold_424_1
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(204..506)
DNA (303bp) protein (101aa)
Putative uncharacterized protein SUGC1.HVF1.ORF1 Tax=uncultured bacterium RepID=A2A1X3_9BACT
hypothetical protein
Tax=RBG_13_Planctomycetes_46_10_curated
PLM3-1_200_b2_sep16_scaffold_424_2
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(889..1524)
DNA (636bp) protein (212aa)
Peptidase C14 caspase catalytic subunit p20 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ICN9_METNO
Peptidase C14 caspase catalytic subunit p20 {ECO:0000313|EMBL:EJZ36060.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
peptidase C14 caspase catalytic subunit p20
PLM3-1_200_b2_sep16_scaffold_424_3
unknown

Not on your lists

comp(1517..1660)
DNA (144bp) protein (48aa)

This feature has no annotations

PLM3-1_200_b2_sep16_scaffold_424_4
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1899..2297
DNA (399bp) protein (133aa)
hypothetical protein Tax=Schlesneria paludicola RepID=UPI00029A9836
Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
PLM3-1_200_b2_sep16_scaffold_424_5
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(2184..2630)
DNA (447bp) protein (149aa)
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM3-1_200_b2_sep16_scaffold_424_6
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

comp(2615..2821)
DNA (207bp) protein (69aa)
Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
PLM3-1_200_b2_sep16_scaffold_424_7
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2936..4573)
DNA (1638bp) protein (546aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Blastococcus saxobsidens genus=Blastococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_424_8
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4599..5165)
DNA (567bp) protein (189aa)
Periplasmic thioredoxin (Cytochrome c biogenesis) bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ccmG; periplasmic thioredoxin (cytochrome c biogenesis)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_424_9
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5167..7128)
DNA (1962bp) protein (654aa)
Cytochrome c-type biogenesis protein cycK bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
cycK; cytochrome c-type biogenesis protein cycK
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_424_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7125..7574)
DNA (450bp) protein (150aa)
Cytochrome c-type biogenesis protein ccmE (Cytochrome c maturation protein E) (Heme chaperone ccmE) bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ccmE; cytochrome c-type biogenesis protein CcmE
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_424_11
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7576..7731)
DNA (156bp) protein (52aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_424_12
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7731..8435)
DNA (705bp) protein (235aa)
Heme ABC transporter (Heme exporter protein C), permease protein (Cytochrome c biogenesis) bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ccmC; heme ABC transporter (heme exporter protein C), permease protein (cytochrome c biogenesis)
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_424_13
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8440..9117)
DNA (678bp) protein (226aa)
Heme exporter, protein B bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Heme exporter, protein B
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_424_14
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9218..9922)
DNA (705bp) protein (235aa)
Heme exporter protein CcmA bin=GWD2_Deltaproteobacteria_55_8 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
heme exporter protein CcmA
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_424_15
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10127..11104
DNA (978bp) protein (326aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Methyloversatilis universalis genus=Methyloversatilis taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_424_16
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11136..11609
DNA (474bp) protein (158aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_424_17
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11626..13119
DNA (1494bp) protein (498aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_424_18
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13371..13805
DNA (435bp) protein (145aa)
id=1921113 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_424_19
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14033..14359
DNA (327bp) protein (109aa)
RNA-binding protein bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rbpA; RNA-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_424_20
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14556..14840)
DNA (285bp) protein (95aa)
Pyruvate-ferredoxin oxidoreductase beta-2 bin=GWC2_Chloroflexi_73_18 species=Metallosphaera sedula genus=Metallosphaera taxon_order=Sulfolobales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
thiamine pyrophosphate domain-containing TPP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Displaying 20 items

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