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PLM3-1_200_b2_sep16_scaffold_453

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_200_b2_sep16_scaffold_453_1
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2..187
DNA (186bp) protein (62aa)
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_453_2
RBG_16_Deltaproteobacteria_50_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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215..898
DNA (684bp) protein (228aa)
cell filamentation protein Fic Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B656B5
cell filamentation protein
Tax=RBG_16_Deltaproteobacteria_50_11_curated
PLM3-1_200_b2_sep16_scaffold_453_3
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1197..2054)
DNA (858bp) protein (286aa)
Transposase of ISGbem_B, Y1_Tnp domain-containing bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
transposase of ISGbem_B
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_200_b2_sep16_scaffold_453_4
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2243..3634)
DNA (1392bp) protein (464aa)
Putative FAD binding domain protein bin=GWD2_Deltaproteobacteria_55_8 species=uncultured marine microorganism HF4000_ANIW141A21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
FAD linked oxidase
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_200_b2_sep16_scaffold_453_5
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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3728..4675
DNA (948bp) protein (316aa)
alias=16ft_combo_ws3_scaffold_2718_17 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM3-1_200_b2_sep16_scaffold_453_6
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

4817..5965
DNA (1149bp) protein (383aa)
citrate synthase (EC:2.3.3.1)
Citrate synthase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AT04_RUBXD
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM3-1_200_b2_sep16_scaffold_453_7
Thaumarchaeota archaeon SCGC AB-539-E09, Thaumarchaeota, Archaea

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comp(6034..6717)
DNA (684bp) protein (228aa)
Putative phosphatase Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7T8A8_9ARCH
Putative phosphatase {ECO:0000313|EMBL:EMR73103.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon SCGC AB-539-E09.;"
phosphatases
PLM3-1_200_b2_sep16_scaffold_453_8
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7151..7435)
DNA (285bp) protein (95aa)
Putative Antitoxin YefM bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
antitoxin
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_200_b2_sep16_scaffold_453_9
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7660..8361)
DNA (702bp) protein (234aa)
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
ABC transporter
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_453_10
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8354..9133)
DNA (780bp) protein (260aa)
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein bin=bin3_NC10 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin3_NC10 organism_group=NC10
putative branched-chain amino acid ABC transporter ATP-binding protein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_200_b2_sep16_scaffold_453_11
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9120..10382)
DNA (1263bp) protein (421aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein bin=bin3_NC10 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin3_NC10 organism_group=NC10
inner-membrane translocator
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_200_b2_sep16_scaffold_453_12
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10379..11311)
DNA (933bp) protein (311aa)
branched-chain amino acid ABC transporter permease; K01997 branched-chain amino acid transport system permease protein bin=bin3_NC10 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
branched-chain amino acid ABC transporter permease
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_453_13
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11365..12546)
DNA (1182bp) protein (394aa)
Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_200_b2_sep16_scaffold_453_14
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12702..14180
DNA (1479bp) protein (493aa)
AsmA family protein bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
AsmA family protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_453_15
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(14237..14839)
DNA (603bp) protein (201aa)
Uncharacterized protein bin=bin3_NC10 species=Bacillus cereus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
Tax=CSP1_5_NC10
PLM3-1_200_b2_sep16_scaffold_453_16
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(14826..15623)
DNA (798bp) protein (266aa)
DNA methylase domain protein bin=GWA2_Methylomirabilis_73_35 species=Leptospira kirschneri genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=CSP1_5_NC10
PLM3-1_200_b2_sep16_scaffold_453_17
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(15829..17163)
DNA (1335bp) protein (445aa)
ribonuclease BN; K07058 membrane protein bin=bin3_NC10 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
ribonuclease BN
Tax=CSP1_5_NC10
PLM3-1_200_b2_sep16_scaffold_453_18
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17317..18588
DNA (1272bp) protein (424aa)
Putative uncharacterized protein LAT2-2 Tax=Selaginella moellendorffii RepID=D8RLZ9_SELML
amino acid transporter
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_200_b2_sep16_scaffold_453_19
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

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18661..20166
DNA (1506bp) protein (502aa)
Transporter Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4T0X4_META2
neurotransmitter:Na+ symporter NSS family
Transporter {ECO:0000256|RuleBase:RU003732}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
PLM3-1_200_b2_sep16_scaffold_453_20
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20531..21226
DNA (696bp) protein (232aa)
Uncharacterized protein Tax=Desulfococcus multivorans DSM 2059 RepID=S7T7F0_DESML
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Displaying 20 items

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