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PLM3-1_50_b1_sep16_scaffold_1355

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_1355_trna_1
unknown

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471..573
DNA (103bp)
transferRNA Ala
PLM3-1_50_b1_sep16_scaffold_1355_1
unknown

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741..1034
DNA (294bp) protein (98aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_1355_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1808..2173
DNA (366bp) protein (122aa)
Zinc finger C2H2 domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJS0_NITGG
zinc finger C2H2 domain-containing protein
Zinc finger C2H2 domain-containing protein {ECO:0000313|EMBL:AFU59468.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_1355_3
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(2192..2746)
DNA (555bp) protein (185aa)
Putative tRNA (Guanine-N(7)-)-methyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILF7_NITGG
putative S-adenosylmethionine-dependent methyltransferase
Putative S-adenosylmethionine-dependent methyltransferase {ECO:0000313|EMBL:AIF83046.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_1355_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(2815..3141)
DNA (327bp) protein (109aa)
DUF59 domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IDI7_NITGG
hypothetical protein
DUF59 domain-containing protein {ECO:0000313|EMBL:AFU59466.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_1355_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(3375..4451)
DNA (1077bp) protein (359aa)
mtnA; translation initiation factor, aIF-2BI family (EC:5.3.1.23)
Putative methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; MTNA-like protein {ECO:0000256|HAMAP-Rule:MF_01678}; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Putative methylthioribose-1-phosphate isomerase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHQ3_NITGG
PLM3-1_50_b1_sep16_scaffold_1355_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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4941..5684
DNA (744bp) protein (248aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGR1_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59020.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_1355_7
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(5785..6393)
DNA (609bp) protein (203aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I6U7_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF82119.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_1355_8
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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6560..6946
DNA (387bp) protein (129aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ID31_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF85079.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_1355_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(7027..8313)
DNA (1287bp) protein (429aa)
Putative 2-alkenal reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH63_NITGG
2-alkenal reductase
Putative 2-alkenal reductase {ECO:0000313|EMBL:AFU58173.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_1355_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8636..8920
DNA (285bp) protein (95aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IAK5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58351.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_1355_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

9267..9596
DNA (330bp) protein (110aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IC19_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58891.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_1355_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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9716..11887
DNA (2172bp) protein (724aa)
Putative ATP-dependent RNA helicase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGG0_NITGG
ATP-dependent RNA helicase
ERRC4-type helicase {ECO:0000313|EMBL:ADK25987.1}; Flags: Fragment;; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera gargensis.;"
PLM3-1_50_b1_sep16_scaffold_1355_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(11933..12880)
DNA (948bp) protein (316aa)
Putative radical SAM domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIH3_NITGG
radical SAM domain-containing protein
Putative radical SAM domain protein {ECO:0000313|EMBL:AFU58833.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_1355_14
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(13090..13554)
DNA (465bp) protein (155aa)
Pentapeptide repeat protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMX6_NITGG
putative low-complexity protein
Putative low-complexity protein {ECO:0000313|EMBL:AIF83642.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_1355_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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13596..14042
DNA (447bp) protein (149aa)
Putative signal transduction response regulator, receiver domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I9I2_NITGG
signal transduction response regulator, receiver domain-containing protein
Putative signal transduction response regulator, receiver domain protein {ECO:0000313|EMBL:AFU58006.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_1355_16
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(14101..14568)
DNA (468bp) protein (156aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INN2_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF82905.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_1355_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

14789..15694
DNA (906bp) protein (302aa)
dys1; deoxyhypusine synthase (EC:2.5.1.46)
Deoxyhypusine synthase {ECO:0000313|EMBL:AFU57566.1}; EC=2.5.1.46 {ECO:0000313|EMBL:AFU57566.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Deoxyhypusine synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I8G5_NITGG
PLM3-1_50_b1_sep16_scaffold_1355_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(15724..18504)
DNA (2781bp) protein (927aa)
Dolichyl-diphosphooligosaccharide--protein glycotransferase {ECO:0000313|EMBL:AFU57543.1}; EC=2.4.99.18 {ECO:0000313|EMBL:AFU57543.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
dolichyl-diphosphooligosaccharide--protein glycotransferase (EC:2.4.1.119)
Dolichyl-diphosphooligosaccharide--protein glycotransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFD7_NITGG
PLM3-1_50_b1_sep16_scaffold_1355_19
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(18786..19439)
DNA (654bp) protein (218aa)
Zn-dependent hydrolase of the beta-lactamase fold protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHY2_NITGG
Zn-dependent hydrolase of the beta-lactamase fold
Zn-dependent hydrolase of the beta-lactamase fold {ECO:0000313|EMBL:AIC16798.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_1355_20
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(19471..19866)
DNA (396bp) protein (132aa)
hypothetical protein Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI00035E2C66
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC16799.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_1355_21
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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20067..20501
DNA (435bp) protein (145aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0II17_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58578.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_1355_22
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(20539..21111)
DNA (573bp) protein (191aa)
Putative uracil DNA glycosylase superfamily protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF13_NITGG
putative uracil DNA glycosylase superfamily protein
Putative uracil DNA glycosylase superfamily protein {ECO:0000313|EMBL:AIC14425.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_1355_23
unknown

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21363..21593
DNA (231bp) protein (77aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_1355_24
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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21842..23137
DNA (1296bp) protein (432aa)
DNA repair helicase RAD25 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE11_NITGG
xpb; putative DNA repair helicase XPB
Putative DNA repair helicase XPB {ECO:0000313|EMBL:AIC16469.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_1355_25
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(23212..24522)
DNA (1311bp) protein (437aa)
Putative helicase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEY5_NITGG
putative helicase
Putative helicase {ECO:0000313|EMBL:AIC14324.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_1355_26
uncultured crenarchaeote, Crenarchaeota, Archaea

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24807..25070
DNA (264bp) protein (88aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q2V9D6_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:ABB88992.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
hypothetical protein
PLM3-1_50_b1_sep16_scaffold_1355_27
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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25256..27304
DNA (2049bp) protein (683aa)
F5/8 type C domain-containing protein Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CB18_MYXFH
F5/8 type C domain-containing protein
F5/8 type C domain-containing protein {ECO:0000313|EMBL:AEI68399.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus (strain ATCC BAA-855 / HW-1).;"
PLM3-1_50_b1_sep16_scaffold_1355_28
uncultured crenarchaeote, Crenarchaeota, Archaea

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27493..28143
DNA (651bp) protein (217aa)
serB; phosphoserine phosphatase SerB (EC:3.1.3.3)
Putative phosphoserine phosphatase Tax=uncultured crenarchaeote RepID=Q2V9E2_9CREN
Putative phosphoserine phosphatase {ECO:0000313|EMBL:ABB88986.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
PLM3-1_50_b1_sep16_scaffold_1355_29
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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28174..28935
DNA (762bp) protein (254aa)
F420-0:gamma-glutamyl ligase (EC:6.3.2.34 6.3.2.31)
F420-0:gamma-glutamyl ligase {ECO:0000313|EMBL:AIF84289.1}; EC=6.3.2.31 {ECO:0000313|EMBL:AIF84289.1};; EC=6.3.2.34 {ECO:0000313|EMBL:AIF84289.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Putative uncharacterized protein Tax=uncultured marine crenarchaeote HF4000_APKG3K8 RepID=B3T7X7_9ARCH
Displaying items 1-30 of 41 in total

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