ggKbase home page

PLM3-1_50_b1_sep16_scaffold_2163

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_2163_1
unknown

Not on your lists

comp(1..150)
DNA (150bp) protein (50aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_2163_2
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

447..1079
DNA (633bp) protein (211aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJL5_NITGG
phosphate transport regulator related to PhoU
Phosphate transport regulator related to PhoU {ECO:0000313|EMBL:AIF82942.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_2163_3
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

1088..2089
DNA (1002bp) protein (334aa)
phosphate/sulfate permease
Phosphate/sulfate permease {ECO:0000313|EMBL:AIF82941.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
low-affinity inorganic phosphate transporter bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
PLM3-1_50_b1_sep16_scaffold_2163_4
unknown

Not on your lists

comp(2251..2523)
DNA (273bp) protein (91aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_2163_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(2744..2977)
DNA (234bp) protein (78aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFI5_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58575.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2163_6
Bacillus marmarensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3168..3959
DNA (792bp) protein (264aa)
Probable DNA repair protein A33I_10820 Tax=Bacillus marmarensis DSM 21297 RepID=U6SSR0_9BACI
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus marmarensis DSM 21297.;"
hypothetical protein
PLM3-1_50_b1_sep16_scaffold_2163_7
Candidatus Jettenia caeni, Candidatus Jettenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

4304..6097
DNA (1794bp) protein (598aa)
Putative metallophosphoesterase Tax=planctomycete KSU-1 RepID=I3IRG3_9PLAN
Putative metallophosphoesterase {ECO:0000313|EMBL:GAB64308.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae.;" source="planctomycete KSU-1.;"
metallophosphoesterase
PLM3-1_50_b1_sep16_scaffold_2163_8
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

6284..7132
DNA (849bp) protein (283aa)
High-affinity nickel-transporter Tax=Thermus thermophilus (strain SG0.5JP17-16) RepID=F6DIQ5_THETG
high-affinity nickel permease
High-affinity nickel permease {ECO:0000313|EMBL:AIF84947.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_2163_9
unknown

Not on your lists

comp(7234..7635)
DNA (402bp) protein (134aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_2163_10
Naumovozyma castellii, Naumovozyma, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

comp(8090..8524)
DNA (435bp) protein (145aa)
Uncharacterized protein Tax=Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630) RepID=G0V5Z1_NAUCC
Uncharacterized protein {ECO:0000313|EMBL:CCC66881.1}; species="Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Naumovozyma.;" source="Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL; Y-12630) (Yeast) (Saccharomyces castellii).;"
clfA; clumping factor
PLM3-1_50_b1_sep16_scaffold_2163_11
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

9453..9704
DNA (252bp) protein (84aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I7H2_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC14550.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_2163_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(9896..10408)
DNA (513bp) protein (171aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEF2_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58150.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2163_13
unknown

Not on your lists

comp(10817..11059)
DNA (243bp) protein (81aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_2163_14
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(11575..12063)
DNA (489bp) protein (163aa)
Putative SnoaL-like polyketide cyclase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF51_NITGG
putative ester cyclase
Putative ester cyclase {ECO:0000313|EMBL:AIF83996.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_2163_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(12285..12536)
DNA (252bp) protein (84aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJC6_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59218.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_2163_16
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(12838..13563)
DNA (726bp) protein (242aa)
glycosyl transferase (EC:2.4.1.-)
Glycosyl transferase {ECO:0000313|EMBL:AIF82220.1}; EC=2.4.1.- {ECO:0000313|EMBL:AIF82220.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Putative glycosyltransferase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJ05_NITGG
PLM3-1_50_b1_sep16_scaffold_2163_17
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(13723..14271)
DNA (549bp) protein (183aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IBQ8_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF83872.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_2163_18
unknown

Not on your lists

14529..15020
DNA (492bp) protein (164aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_2163_19

Not on your lists

15884..16144
DNA (261bp) protein (87aa)
Putative Zn-finger in ubiquitin-hydrolases and other protein Tax=uncultured marine crenarchaeote HF4000_APKG5N21 RepID=B3T8L0_9ARCH
Zinc finger UBP-type protein (TC.CPA1) {ECO:0000313|EMBL:AIE91953.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote AD1000_18_B11.;"
Zinc finger UBP-type protein
PLM3-1_50_b1_sep16_scaffold_2163_20
unknown

Not on your lists

16552..16848
DNA (297bp) protein (99aa)
hypothetical protein
PLM3-1_50_b1_sep16_scaffold_2163_21
unknown

Not on your lists

16868..17113
DNA (246bp) protein (82aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_2163_22

Not on your lists

comp(17120..17713)
DNA (594bp) protein (198aa)
3-hydroxypropanoate dehydrogenase protein {ECO:0000313|EMBL:KER05468.1}; EC=1.1.1.- {ECO:0000313|EMBL:KER05468.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-E16.;"
Nitroreductase Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ANY8_PELPD
nitroreductase
PLM3-1_50_b1_sep16_scaffold_2163_23
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

17967..18170
DNA (204bp) protein (68aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICP6_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF84262.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_2163_24
unknown

Not on your lists

18265..19257
DNA (993bp) protein (331aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_2163_25
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

19414..19899
DNA (486bp) protein (162aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF85111.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_2163_26
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(19966..20970)
DNA (1005bp) protein (335aa)
Putative GAF sensor protein Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A2R4_NITMS
GAF sensor protein
Putative GAF sensor protein {ECO:0000313|EMBL:ABX13591.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (strain SCM1).;"
PLM3-1_50_b1_sep16_scaffold_2163_27
uncultured crenarchaeote, Crenarchaeota, Archaea

Not on your lists

21139..21450
DNA (312bp) protein (104aa)
Putative uncharacterized protein Tax=uncultured crenarchaeote RepID=Q702E1_9CREN
Putative uncharacterized protein {ECO:0000313|EMBL:CAF28683.1}; species="Archaea; Crenarchaeota; environmental samples.;" source="uncultured crenarchaeote.;"
hypothetical protein
PLM3-1_50_b1_sep16_scaffold_2163_28
unknown

Not on your lists

21520..22116
DNA (597bp) protein (199aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_2163_29
unknown

Not on your lists

22341..22736
DNA (396bp) protein (132aa)

This feature has no annotations

Displaying 29 items

View Taxonomy