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PLM3-1_50_b1_sep16_scaffold_232

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_232_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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2..706
DNA (705bp) protein (235aa)
Putative methyltransferase type 11 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGS9_NITGG
methyltransferase type 11
Putative methyltransferase type 11 {ECO:0000313|EMBL:AFU59045.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_232_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(775..2154)
DNA (1380bp) protein (460aa)
Peptide/opine/nickel ABC uptake transporter, permease protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0II52_NITGG
dppC; peptide/opine/nickel ABC uptake transporter permease
Peptide/opine/nickel ABC uptake transporter, permease protein {ECO:0000313|EMBL:AFU59610.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_232_3
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(2159..3202)
DNA (1044bp) protein (348aa)
Peptide/opine/nickel ABC uptake transporter, permease protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE21_NITGG
ABC-type dipeptide/oligopeptide/nickel transport system, permease component
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:AIF82850.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_232_4

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comp(3589..5703)
DNA (2115bp) protein (705aa)
Solute binding protein-like protein Tax=uncultured archaeon RepID=I3RKK7_9ARCH
Solute binding protein-like protein {ECO:0000313|EMBL:AFK24867.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
peptide/opine/nickel ABC uptake transporter, substrate-binding protein
PLM3-1_50_b1_sep16_scaffold_232_5
unknown

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5722..6777
DNA (1056bp) protein (352aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_232_6
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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comp(7073..8164)
DNA (1092bp) protein (364aa)
CBS domain-containing protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
signal-transduction protein
Tax=RBG_13_Bathyarchaeota_38_9_curated
PLM3-1_50_b1_sep16_scaffold_232_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8520..8981
DNA (462bp) protein (154aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INC3_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59124.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_232_8

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comp(8991..9440)
DNA (450bp) protein (150aa)
Dehydrogenase-reductase SDR family member 3 protein {ECO:0000313|EMBL:KER06442.1}; EC=1.1.-.- {ECO:0000313|EMBL:KER06442.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-E16.;"
Short-chain dehydrogenase/reductase SDR Tax=Candidatus Nitrosopumilus koreensis AR1 RepID=K0BBP0_9ARCH
short-chain dehydrogenase/reductase SDR
PLM3-1_50_b1_sep16_scaffold_232_9
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(9447..9788)
DNA (342bp) protein (114aa)
Short-chain dehydrogenase/reductase SDR Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A535_NITMS
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABX11944.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (strain SCM1).;"
PLM3-1_50_b1_sep16_scaffold_232_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(9834..10664)
DNA (831bp) protein (277aa)
Uncharacterized protein family UPF0104 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGY9_NITGG
hypothetical protein
Uncharacterized protein family UPF0104 {ECO:0000313|EMBL:AFU59125.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_232_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10965..11723
DNA (759bp) protein (253aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ICM9_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU59126.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_232_12

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11726..12685
DNA (960bp) protein (320aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_68_E02.;"
thrB; homoserine kinase (EC:2.7.1.39)
hypothetical protein Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI00037C6ED5
PLM3-1_50_b1_sep16_scaffold_232_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(12714..13595)
DNA (882bp) protein (294aa)
3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55)
3-hydroxybutyryl-CoA dehydratase {ECO:0000313|EMBL:AFU59128.1}; EC=4.2.1.55 {ECO:0000313|EMBL:AFU59128.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
3-hydroxybutyryl-CoA dehydratase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJ40_NITGG
PLM3-1_50_b1_sep16_scaffold_232_14
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(13720..15336)
DNA (1617bp) protein (539aa)
Radical SAM domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMX9_NITGG
radical SAM domain protein
Radical SAM domain protein {ECO:0000313|EMBL:AIC14967.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_232_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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15583..16350
DNA (768bp) protein (256aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHL6_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58403.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_232_16
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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16722..17075
DNA (354bp) protein (118aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IAP2_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC14970.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_232_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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17097..18164
DNA (1068bp) protein (356aa)
pelA; protein pelota (EC:3.1.-.-)
Protein pelota homolog {ECO:0000256|HAMAP-Rule:MF_01853, ECO:0000256|SAAS:SAAS00004956}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01853, ECO:0000256|SAAS:SAAS00011872};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Protein pelota homolog Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF42_NITGG
PLM3-1_50_b1_sep16_scaffold_232_18

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comp(18181..18516)
DNA (336bp) protein (112aa)
Divalent-cation tolerance protein CutA {ECO:0000313|EMBL:KFM15260.1}; EC=4.2.3.1 {ECO:0000313|EMBL:KFM15260.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-O18.;"
hypothetical protein Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI00038091A7
divalent cation tolerance protein, CutA1 family
PLM3-1_50_b1_sep16_scaffold_232_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(18570..19226)
DNA (657bp) protein (219aa)
Putative SNF7 protein Tax=Candidatus Nitrososphaera gargensis RepID=K0IJ37_NITGG
SNF7 protein
Putative SNF7 protein {ECO:0000313|EMBL:AFU59123.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_232_20
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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19413..20879
DNA (1467bp) protein (489aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJG3_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF84377.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_232_21
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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20918..21904
DNA (987bp) protein (329aa)
cation diffusion facilitator family transporter
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:AIF82255.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Co/Zn/Cd cation transporter bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
PLM3-1_50_b1_sep16_scaffold_232_22
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(22311..24542)
DNA (2232bp) protein (744aa)
Elongation factor 2 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IK76_NITGG
fusA; elongation factor 2
Elongation factor 2 {ECO:0000256|HAMAP-Rule:MF_00054, ECO:0000256|SAAS:SAAS00088569}; Short=EF-2 {ECO:0000256|HAMAP-Rule:MF_00054};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_232_23
Candidatus Nitrosopumilus sp. AR2, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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24718..25572
DNA (855bp) protein (285aa)
1,4-dihydroxy-6-naphtoate synthase {ECO:0000256|HAMAP-Rule:MF_00996}; EC=4.1.-.- {ECO:0000256|HAMAP-Rule:MF_00996};; Menaquinone biosynthetic enzyme MqnD {ECO:0000256|HAMAP-Rule:MF_00996}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. AR2.;"
Uncharacterized protein Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BC68_9ARCH
hypothetical protein
PLM3-1_50_b1_sep16_scaffold_232_24
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(25599..26690)
DNA (1092bp) protein (364aa)
cofH3; FO synthase subunit 2 (EC:2.5.1.-)
FO synthase subunit 2 {ECO:0000313|EMBL:AFU59628.1}; EC=2.5.1.- {ECO:0000313|EMBL:AFU59628.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
FO synthase subunit 2 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IK72_NITGG
PLM3-1_50_b1_sep16_scaffold_232_25
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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26793..27260
DNA (468bp) protein (156aa)
cofH2; FO synthase subunit 2 (EC:2.5.1.-)
Cyclic dehypoxanthine futalosine synthase {ECO:0000256|HAMAP-Rule:MF_00992}; Short=Cyclic DHFL synthase {ECO:0000256|HAMAP-Rule:MF_00992};; EC=1.21.98.1 {ECO:0000256|HAMAP-Rule:MF_00992};; Dehypoxanthine futalosine cyclase {ECO:0000256|HAMAP-Rule:MF_00992}; Menaquinone biosynthetic enzyme MqnC {ECO:0000256|HAMAP-Rule:MF_00992}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
FO synthase subunit 2 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILR6_NITGG
PLM3-1_50_b1_sep16_scaffold_232_26
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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27311..27802
DNA (492bp) protein (164aa)
Cyclic dehypoxanthine futalosine synthase {ECO:0000256|HAMAP-Rule:MF_00992}; Short=Cyclic DHFL synthase {ECO:0000256|HAMAP-Rule:MF_00992};; EC=1.21.98.1 {ECO:0000256|HAMAP-Rule:MF_00992};; Dehypoxanthine futalosine cyclase {ECO:0000256|HAMAP-Rule:MF_00992}; Menaquinone biosynthetic enzyme MqnC {ECO:0000256|HAMAP-Rule:MF_00992}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
FO synthase subunit 2 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILR6_NITGG
de-hypoxanthine futalosine cyclase
PLM3-1_50_b1_sep16_scaffold_232_27
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

28006..29430
DNA (1425bp) protein (475aa)
hcs; hydroxymethylglutaryl-CoA synthase (EC:2.3.3.10)
Hydroxymethylglutaryl-CoA synthase {ECO:0000313|EMBL:AFU59333.1}; EC=2.3.3.10 {ECO:0000313|EMBL:AFU59333.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Hydroxymethylglutaryl-CoA synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJH9_NITGG
PLM3-1_50_b1_sep16_scaffold_232_28
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(29427..30656)
DNA (1230bp) protein (410aa)
threonine ammonia-lyase, medium form (EC:4.3.1.19)
Threonine ammonia-lyase, medium form {ECO:0000313|EMBL:AIF83385.1}; EC=4.3.1.19 {ECO:0000313|EMBL:AIF83385.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
Threonine ammonia-lyase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ID68_NITGG
PLM3-1_50_b1_sep16_scaffold_232_29
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(30736..31596)
DNA (861bp) protein (287aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ID59_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC14198.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_232_30
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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31969..32379
DNA (411bp) protein (137aa)
Tax=RBG_13_Bathyarchaeota_38_9_curated
Displaying items 1-30 of 38 in total

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