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PLM3-1_50_b1_sep16_scaffold_642

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_642_1
unknown

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1..204
DNA (204bp) protein (68aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_642_2
Candidatus Nitrosopumilus salaria, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(258..821)
DNA (564bp) protein (188aa)
Putative DNA protection during starvation protein 2 Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D2T7_9ARCH
Putative DNA protection during starvation protein 2 {ECO:0000313|EMBL:EIJ66030.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus salaria BD31.;"
ferritin Dps family protein
PLM3-1_50_b1_sep16_scaffold_642_3
Candidatus Jettenia caeni, Candidatus Jettenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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comp(1244..2422)
DNA (1179bp) protein (393aa)
Putative metallophosphoesterase Tax=planctomycete KSU-1 RepID=I3IRG3_9PLAN
Putative metallophosphoesterase {ECO:0000313|EMBL:GAB64308.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae.;" source="planctomycete KSU-1.;"
putative phosphodiesterase
PLM3-1_50_b1_sep16_scaffold_642_4
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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2711..3067
DNA (357bp) protein (119aa)
Heat-shock protein Hsp22 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I879_NITGG
molecular chaperone (small heat shock protein)
Molecular chaperone (Small heat shock protein) {ECO:0000313|EMBL:AIF82435.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_642_5
unknown

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3121..3468
DNA (348bp) protein (116aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_642_6

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3494..3889
DNA (396bp) protein (132aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IML4_NITGG
Uncharacterized protein {ECO:0000313|EMBL:AIF25334.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote SAT1000_50_F07.;"
hypothetical protein
PLM3-1_50_b1_sep16_scaffold_642_7
Methanosarcina vacuolata, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(3976..4941)
DNA (966bp) protein (322aa)
PKD domain containing protein Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GF92_METPE
PKD domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:AKB43863.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina vacuolata Z-761.;"
PLM3-1_50_b1_sep16_scaffold_642_8
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(5071..5286)
DNA (216bp) protein (72aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN05_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC14815.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_642_9
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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5552..6457
DNA (906bp) protein (302aa)
tfb3; transcription initiation factor IIB
Transcription initiation factor TFIIIB, Brf1 subunit/transcription initiation factor TFIIB {ECO:0000313|EMBL:AIF84680.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
transcription factor TFIIB cyclin-related protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
PLM3-1_50_b1_sep16_scaffold_642_10
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

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6615..6986
DNA (372bp) protein (124aa)
hypothetical protein Tax=Alicyclobacillus pohliae RepID=UPI00035D4A6E
Tax=CG_Anaero_02
PLM3-1_50_b1_sep16_scaffold_642_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(7198..9438)
DNA (2241bp) protein (747aa)
polB2; DNA polymerase B (EC:2.7.7.7)
DNA polymerase {ECO:0000256|RuleBase:RU000442}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU000442};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
DNA polymerase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKE2_NITGG
PLM3-1_50_b1_sep16_scaffold_642_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(9722..10651)
DNA (930bp) protein (310aa)
Pirin domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I7F9_NITGG
pirin domain-containing protein
Pirin domain protein {ECO:0000313|EMBL:AFU57171.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_642_13
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(10819..11196)
DNA (378bp) protein (126aa)
Putative Pyridoxamine 5'-phosphate oxidase Tax=Thaumarchaeota archaeon N4 RepID=V6ATJ3_9ARCH
Putative Pyridoxamine 5'-phosphate oxidase {ECO:0000313|EMBL:CDI06036.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain-containing protein
PLM3-1_50_b1_sep16_scaffold_642_14
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(11389..12618)
DNA (1230bp) protein (410aa)
Transporter, major facilitator family protein Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D0U0_9ARCH
arabinose efflux permease family protein
Arabinose efflux permease family protein {ECO:0000313|EMBL:AIF84826.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_642_15
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(12770..13060)
DNA (291bp) protein (97aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIE2_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF84521.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_642_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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13483..14469
DNA (987bp) protein (329aa)
Putative phosphosulfolactate synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IK14_NITGG
phosphosulfolactate synthase
Putative phosphosulfolactate synthase {ECO:0000313|EMBL:AFU59568.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_642_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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14723..15868
DNA (1146bp) protein (382aa)
ABC uptake transporter, substrate-binding protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGM5_NITGG
ABC uptake transporter, substrate-binding protein
ABC uptake transporter, substrate-binding protein {ECO:0000313|EMBL:AFU57983.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_642_18
Candidatus Nitrosopumilus sp. D3C, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(16078..17340)
DNA (1263bp) protein (421aa)
Rhodanese domain-containing protein Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KKD2_9ARCH
Rhodanese domain-containing protein
Rhodanese domain-containing protein {ECO:0000313|EMBL:AJM92005.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. D3C.;"
PLM3-1_50_b1_sep16_scaffold_642_19
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(17586..18476)
DNA (891bp) protein (297aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJW71034.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. NF5.;"
PLM3-1_50_b1_sep16_scaffold_642_20
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(19056..19553)
DNA (498bp) protein (166aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INW9_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU60104.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_50_b1_sep16_scaffold_642_21
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(19685..20011)
DNA (327bp) protein (109aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IFE2_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF83571.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_50_b1_sep16_scaffold_642_22
unknown

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20293..20487
DNA (195bp) protein (65aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_642_23
unknown

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comp(20526..20915)
DNA (390bp) protein (130aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_642_24
unknown

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comp(21124..21255)
DNA (132bp) protein (44aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_642_25
unknown

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comp(21273..21479)
DNA (207bp) protein (69aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_642_26
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(21694..22569)
DNA (876bp) protein (292aa)
Dienelactone hydrolase Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KI50_9ARCH
putative dienelactone hydrolase family
Putative dienelactone hydrolase family {ECO:0000313|EMBL:AIC16683.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_50_b1_sep16_scaffold_642_27
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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22884..23198
DNA (315bp) protein (105aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6AUA7_9ARCH
membrane protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:AIC16975.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Displaying 27 items

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