ggKbase home page

PLM3-1_50_b1_sep16_scaffold_1476_3

Organism: PLM6_50_b1_sep16_Thaumarchaeota_Marine_Group_I_36_8

near complete RP 33 / 55 MC: 3 BSCG 19 / 51 MC: 2 ASCG 37 / 38 MC: 1
Location: 4178..8002

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};; Flags: Fragment;; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera gargensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.6
  • Coverage: 1268.0
  • Bit_score: 2162
  • Evalue 0.0
rpoA; DNA-directed RNA polymerase subunit A (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 83.6
  • Coverage: 1268.0
  • Bit_score: 2162
  • Evalue 0.0
DNA-directed RNA polymerase Tax=Candidatus Nitrososphaera gargensis RepID=K0IC33_NITGG similarity UNIREF
DB: UNIREF100
  • Identity: 83.6
  • Coverage: 1268.0
  • Bit_score: 2162
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Candidatus Nitrososphaera gargensis → Nitrososphaera → Nitrososphaerales → Nitrososphaeria → Thaumarchaeota → Archaea

Sequences

DNA sequence
Length: 3825
ATGGAAGTTGAAGATACCCTAAAAATATTAGGCGGTATTAAGTTTAGTGTATTATCTCCAGTAGAGATTCGAAAATTCAGTGTAGTTGAAATCACAGCTCCAGAGACGTACGATGAGGATGGTATGGCAGTTCAAGGTGGACTCATGGATAACAGATTGGGTACACTTGAACCCGGACAGAAGTGTGGAACTTGTGGAAATACTTCTGCCAACTGCCCTGGACATTTTGGCCACATTGAATTGGCTGAAGCAGTACTTCACATTGCTTTCGTTGACGATATACACAAGTTGTTGCTCGTTTCTTGTAGATCTTGTAGTAGGATAAAACTGTCAAATGAGGATCTGGCAAAATTCAAGGAACTTCGAGATACCAAAGCCGCATATGCAGTAATTACTCTGGAGAATATCAAAGAGGAAATAATTGAAAAGGCAAAAAAAGTAAAGATATGTCCTCACTGTCAAAAAGAGCAATATGATCTTGTGTTTACAAAACCTACCATATTTGTAGAAAAAACTGAAATTGGTGAAAACAGACTTCTTCCTATAACCATCCGGGAACGACTCATGAATATTCCAAATGATGACTTGGTTTTATTAGGCTATGATCCAGAAACCGCAAGACCAGAATGGTTCGTATTACAAGTCTTACCGGTTCCTCCTGTTACTGTTAGACCGTCAATTATTTTGGAAACTGGAATTAGATCGGAGGATGACCTGACCCACAAATTGGTTGATATCATTAGAGTTAATCAAAGATTAAAGGAAAGCAAAGAGGCTGGAACGCCGCCCCTTATTGTCCAGGATCTTGTTGACCTTCTTCAGTACCATGTAACCACATACTTTGACAATGAAGTTTCTGGCATTCCTCAGGCTCATCATCGATCCGGTAGGCCCCTGAAGACTTTGACACAAAGATTAAAGGGAAAAGAAGGACGCTTTAGAGGGTCGTTATCTGGCAAGAGAGTTGATTTTTCCAGCAGGACTGTAATATCACCTGATCCTAATCTAACCATTTCTGATGTAGGGGTTCCAGTGGATGTTGCAAGGAAATTAACTATACCTGAAACGGTTAATGAGTGGAACATTGAAGACTTGAAGAAAATGATAACCAACGGTCCTAATGAATACCCTGGCGCAAATTACATCATAAGAACAGATGGCGTAAAAATACGACTTGATTACGTTACCGATAGAAATATCCTTGCTGATTCAATAAGTCCTGGCTATATTGTAGAGAGGCACTTGCGCGATGGAGATTCAGTAATCTTTAACAGACAACCGTCCTTGCACAGGATGTCCATCATGGCTCATTATGTTAAAGTACTTCCATATAGAACATTTAGGTTGCATCCTGCTGTCTGTCCACCCTATAACGCAGATTTTGATGGAGACGAGATGAATCTTCATGTTCCGCAAAGTGAGGAAGCCCGTGCAGAGGCCGCGCTGCTGATGAGAGTACAGGATCAGCTAATCTCACCTAGATATGGAGGACCAATAATTGGAGCTATTAGGGATTTCATAACAGGCGCCTTTATCCTTACACAGGACAAGACATTTTTGAAAGAAGAAGAATTCACAAATCTGGCCTTGCTAGGGGGATATTCAGGACCACTACCTGAACCAAAACATCATGATAATGGCAGAAAAATTTACACTGGAAAGCAGCTTTTTTCACTCTTCTTGCCCAAGGACTTTAATTTCGTAATTACCTCAAAGTGGAACAAGGCATCCAAAGGTGAGGGAAAAGATGTTGTGATAAGAAATGGTGAATTAATGAGTGGTGTTATTGACAAAGCATCAATTGGAGCAGAGGAACCAGATAGTGTTTTACACAGAATAGCAAAAGATTACGGAAATGAGGCAGCAAAACGATTCTTGGATTCAATTCTGATAGTGTTAAAAACATACATTACTCACAATGGCTTTTCCTACGGCTACTCTGACTTGTGGTTGTCAGATGATACCAGAAATGAGATAAGCAATGTTATTCTCAAGGCATATGAAAAGGTATATGAATTAATAAAACAACACGATGATGAAACGTTACCATTAACAAGAGGTCTATCACCTGCTGAAGCCTTAGAACTCTATGTGGTAAATGAACTTTCAAGGGCTCGTGATAGAGCAGGCAAAACTGCGGACCGTGCATTCCCAGATGATAACTCTGGTGTCATTATGGCATCAACTGGCGCAAGAGGTTCCACTCTAAACATCGGTCAGATGACAGCCGCATTAGGGCAGCAGTCTATTAGAGGCAGAAGGATTACAAAAGGTTATAGAGATAGATCTCTCCCTCATTTCAAACCAAATGACGCAAATCCTGACGCCAAGGGTTTTGTTAAATCAAATTATAGAGACGGACTCAGTCCTCTAGAGTTTTTCTTCCACGCAATGGGCGGTAGAGAAGGGTTAGTAGATACGGCGGTAAGAACTCAACAATCTGGATACATGCAAAGAAGACTCATTAATGCACTGGAACACCTGAAGATAGAATACGACCAGACTGTACGAGATCCACATGGTAATATCATACAGTTTGTTTATGGAGAAGACGGAATAGATCCTGCAAAAAGCGATCATGGTGAAGCGGTTAATATTTCTCGTTTGATCGAGGGCGAATTATTAGTTGATGAAGGCAAAAAAGCAACAGAAAAAGAGATCTCAGAAATATTAAGTAAACATGCCAAGCATCTTAACCCAAGACTTAGAGAAAAGTTGTTACTAGCTCTTAGTCAAAACAAAATAAGCCGAGATGGCGCTAACAAAGTGATAAAGAAGGCTGTGGATCTAATCAACAGGGCGATGGTAGAACCCGGAGAGGCTGTAGGTGTTGTAACAGCTCAATCTATTGGCGAGCCGGGAACCCAGATGACGCTAAGAACATTCCATTTTGCCGGTGTAAAAGAAAGAAACGTTACCCTAGGATTGCCTAGGCTAATAGAACTTGTAGATGCGCGGAAAAAGCCGGTCACACCAACCATGGATGTGTATCTGAATGAAGAACATAAAGTATCAAGAGAAAAGGCTCTCAATGTTGCAAGGGATATAATATTTACAAAGGTAGCTGATTTAATTGAAAGAAGTGAGACTGATTATTCCGGAATACTCACATTCCATATTTCAGATTCCAAATTATCTGAACGGGGATGCTCTATCGAAGACATTATGGAGGTGCTAAAGGGTCCCAAGAAGAAATACGACGTTACTTTGCAAGAAGCAAAGAAAATTATAAAAATATCGATTGCAGGAGAACCTGACGCGCAGACGTTACTCACAATGAAGAACAAGCTATTAAACGCAAGAGTGAAAGGTGTCCAAGACATTGAAAGAGTAACAATTGTTAAGCAAAGTGAGGAATGGGTAATTCAAACTGCAGGCTCAAATCTTTCCAAGATAATAGCGATTGACGGTATTGATACTTCAAGGATTACAACAAACAATGTCTATGAAGTTTGGCAGACACTTGGAATAGAGGCTGCAAGAAATGCATTGATTAAAGAAGTCACCAACACAGTGGAAGAACAGGGACTGGAAGTTGATATGAGGCATATTATGTTGGTAGCCGATCTTATGACATTAAAAGGACATTTGCAGCAAATAGGAAGACATGGAATCGCTGGTACCAAAACATCTGTACTGGCCCGGGCCGCATTTGAAATTACTGTACCTACTATTGCAAGAGCTTCATTGGAAGGACAGATAGAGTCCCTTAAAGGTGTAACAGAAAACGTTATAGTAGGCGCCACCGTACCTATTGGTACCGGTATGGTCGAACTTTACATGAGTGTGAAAGATGAAAATGAAAAATCTCGAAAAAACAATTAA
PROTEIN sequence
Length: 1275
MEVEDTLKILGGIKFSVLSPVEIRKFSVVEITAPETYDEDGMAVQGGLMDNRLGTLEPGQKCGTCGNTSANCPGHFGHIELAEAVLHIAFVDDIHKLLLVSCRSCSRIKLSNEDLAKFKELRDTKAAYAVITLENIKEEIIEKAKKVKICPHCQKEQYDLVFTKPTIFVEKTEIGENRLLPITIRERLMNIPNDDLVLLGYDPETARPEWFVLQVLPVPPVTVRPSIILETGIRSEDDLTHKLVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHVTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLTISDVGVPVDVARKLTIPETVNEWNIEDLKKMITNGPNEYPGANYIIRTDGVKIRLDYVTDRNILADSISPGYIVERHLRDGDSVIFNRQPSLHRMSIMAHYVKVLPYRTFRLHPAVCPPYNADFDGDEMNLHVPQSEEARAEAALLMRVQDQLISPRYGGPIIGAIRDFITGAFILTQDKTFLKEEEFTNLALLGGYSGPLPEPKHHDNGRKIYTGKQLFSLFLPKDFNFVITSKWNKASKGEGKDVVIRNGELMSGVIDKASIGAEEPDSVLHRIAKDYGNEAAKRFLDSILIVLKTYITHNGFSYGYSDLWLSDDTRNEISNVILKAYEKVYELIKQHDDETLPLTRGLSPAEALELYVVNELSRARDRAGKTADRAFPDDNSGVIMASTGARGSTLNIGQMTAALGQQSIRGRRITKGYRDRSLPHFKPNDANPDAKGFVKSNYRDGLSPLEFFFHAMGGREGLVDTAVRTQQSGYMQRRLINALEHLKIEYDQTVRDPHGNIIQFVYGEDGIDPAKSDHGEAVNISRLIEGELLVDEGKKATEKEISEILSKHAKHLNPRLREKLLLALSQNKISRDGANKVIKKAVDLINRAMVEPGEAVGVVTAQSIGEPGTQMTLRTFHFAGVKERNVTLGLPRLIELVDARKKPVTPTMDVYLNEEHKVSREKALNVARDIIFTKVADLIERSETDYSGILTFHISDSKLSERGCSIEDIMEVLKGPKKKYDVTLQEAKKIIKISIAGEPDAQTLLTMKNKLLNARVKGVQDIERVTIVKQSEEWVIQTAGSNLSKIIAIDGIDTSRITTNNVYEVWQTLGIEAARNALIKEVTNTVEEQGLEVDMRHIMLVADLMTLKGHLQQIGRHGIAGTKTSVLARAAFEITVPTIARASLEGQIESLKGVTENVIVGATVPIGTGMVELYMSVKDENEKSRKNN*