ggKbase home page

PLM3-1_50_b1_sep16_scaffold_2035

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b1_sep16_scaffold_2035_1
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(2..487)
DNA (486bp) protein (162aa)
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase bin=GWC2_Chloroflexi_73_18 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=RBG_16_RIF_CHLX_69_14_curated
PLM3-1_50_b1_sep16_scaffold_2035_2
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(484..1065)
DNA (582bp) protein (194aa)
putative Ribosomal RNA small subunit methyltransferase D (EC:2.1.1.52) bin=bin8_Chloro species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin8_Chloro organism_group=Chloroflexi
methyltransferase
Tax=RBG_16_RIF_CHLX_69_14_curated
PLM3-1_50_b1_sep16_scaffold_2035_3
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(1075..3297)
DNA (2223bp) protein (741aa)
recG; ATP-dependent DNA helicase RecG (EC:3.6.1.-); K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] bin=bin8_Chloro species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
ATP-dependent DNA helicase RecG
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3-1_50_b1_sep16_scaffold_2035_4
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(3307..5013)
DNA (1707bp) protein (569aa)
yloV; DAK2 domain fusion protein bin=bin8_Chloro species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
hypothetical protein
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3-1_50_b1_sep16_scaffold_2035_5
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(5014..5436)
DNA (423bp) protein (141aa)
id=3811417 bin=GWC2_Chloroflexi_73_18 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_2035_6
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

5561..5758
DNA (198bp) protein (66aa)
id=14628943 bin=bin8_Chloro tax=bin8_Chloro organism_group=Chloroflexi
Tax=CSP1_4_Chloroflexi
PLM3-1_50_b1_sep16_scaffold_2035_7
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(5863..6309)
DNA (447bp) protein (149aa)
dtd; D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-tyrosyl-tRNA(Tyr) deacylase Tax=Dinoroseobacter shibae (strain DFL 12) RepID=DTD_DINSH
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_2035_8
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(6306..7238)
DNA (933bp) protein (311aa)
Ribulose-phosphate 3-epimerase bin=GWC2_Chloroflexi_73_18 species=Meiothermus silvanus genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
ribulose-phosphate 3-epimerase
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3-1_50_b1_sep16_scaffold_2035_9
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(7241..8419)
DNA (1179bp) protein (393aa)
putative ribosomal RNA large subunit methyltransferase N (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN bin=GWC2_Chloroflexi_73_18 species=unknown genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_2035_10
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(8416..9354)
DNA (939bp) protein (313aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Tax=CSP1_4_Chloroflexi
PLM3-1_50_b1_sep16_scaffold_2035_11
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(9351..9866)
DNA (516bp) protein (172aa)
peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] bin=bin8_Chloro species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin8_Chloro organism_group=Chloroflexi
peptide deformylase (EC:3.5.1.88)
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_2035_12
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(9934..10359)
DNA (426bp) protein (142aa)
hypothetical protein Tax=Leucothrix mucor RepID=UPI0003B4969E
Tax=CSP1_4_Chloroflexi
PLM3-1_50_b1_sep16_scaffold_2035_13
unknown

Not on your lists

10476..10727
DNA (252bp) protein (84aa)

This feature has no annotations

PLM3-1_50_b1_sep16_scaffold_2035_14
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(10759..11751)
DNA (993bp) protein (331aa)
primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin8_Chloro organism_group=Chloroflexi
priA; primosomal protein N'
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_2035_15
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(11696..13225)
DNA (1530bp) protein (510aa)
Putative DEAD/DEAH box helicase bin=GWC2_Chloroflexi_73_18 species=uncultured marine microorganism HF4000_APKG7H23 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
priA; primosomal protein N'
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM3-1_50_b1_sep16_scaffold_2035_16
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(13229..13951)
DNA (723bp) protein (241aa)
gmk; guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8] bin=bin8_Chloro species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
gmk; guanylate kinase
Tax=CSP1_4_Chloroflexi
PLM3-1_50_b1_sep16_scaffold_2035_17
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(13948..14907)
DNA (960bp) protein (320aa)
Pseudouridine synthase bin=GWC2_Chloroflexi_73_18 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
RluA family pseudouridine synthase
Tax=RBG_16_RIF_CHLX_70_13_curated
PLM3-1_50_b1_sep16_scaffold_2035_18
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(14900..15457)
DNA (558bp) protein (186aa)
lspA; signal peptidase II (EC:3.4.23.36)
Lipoprotein signal peptidase bin=GWC2_Chloroflexi_73_18 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=RBG_16_RIF_CHLX_69_14_curated
PLM3-1_50_b1_sep16_scaffold_2035_19
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(15454..18765)
DNA (3312bp) protein (1104aa)
isoleucyl-tRNA synthetase; K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] bin=bin8_Chloro species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
isoleucyl-tRNA synthetase
Tax=CSP1_4_Chloroflexi
PLM3-1_50_b1_sep16_scaffold_2035_20
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

18851..20647
DNA (1797bp) protein (599aa)
Cell envelope-related transcriptional attenuator bin=GWC2_Chloroflexi_73_18 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
cell envelope-related transcriptional attenuator
Tax=RBG_16_RIF_CHLX_69_14_curated
PLM3-1_50_b1_sep16_scaffold_2035_21
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(20680..21108)
DNA (429bp) protein (143aa)
Putative branched-chain-amino-acid aminotransferase bin=GWC2_Chloroflexi_73_18 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
branched-chain amino acid aminotransferase
Tax=RBG_16_RIF_CHLX_70_13_curated
Displaying 21 items

View Taxonomy