ggKbase home page

PLM3_127_b1_sep16_scaffold_4014

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b1_sep16_scaffold_4014_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2..394
DNA (393bp) protein (131aa)
dihydrodipicolinate synthase/N-acetylneuraminate lyase (EC:4.2.1.52)
Dihydrodipicolinate synthase/N-acetylneuraminate lyase bin=GWA2_Methylomirabilis_73_35 species=Blastococcus saxobsidens genus=Blastococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b1_sep16_scaffold_4014_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

400..1209
DNA (810bp) protein (270aa)
Putative esterase/lipase bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
esterase/lipase
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b1_sep16_scaffold_4014_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(1234..2133)
DNA (900bp) protein (300aa)
Peptidase M23B bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
peptidase M23B
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b1_sep16_scaffold_4014_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2141..2566)
DNA (426bp) protein (142aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b1_sep16_scaffold_4014_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

2815..3987
DNA (1173bp) protein (391aa)
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1)
Aminotransferase class I and II bin=GWC2_Methylomirabilis_70_24 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b1_sep16_scaffold_4014_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

4046..5344
DNA (1299bp) protein (433aa)
Homoserine dehydrogenase bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hom; homoserine dehydrogenase
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b1_sep16_scaffold_4014_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

5379..6374
DNA (996bp) protein (332aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b1_sep16_scaffold_4014_8
unknown

Not on your lists

comp(6350..6577)
DNA (228bp) protein (76aa)

This feature has no annotations

PLM3_127_b1_sep16_scaffold_4014_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7038..7532
DNA (495bp) protein (165aa)
RNA polymerase sigma factor bin=GWC2_Methylomirabilis_70_24 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
sigma-70 family RNA polymerase sigma factor
Tax=GWA2_Rokubacteria_70_23_curated
Displaying 9 items

View Taxonomy