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PLM3_127_b2_sep16_scaffold_5159

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_5159_1
CG_Syntroph_02, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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543..908
DNA (366bp) protein (122aa)
Response regulator receiver protein Tax=Magnetococcus sp. (strain MC-1) RepID=A0LCK7_MAGSM
response regulator receiver protein
Tax=CG_Syntroph_02
PLM3_127_b2_sep16_scaffold_5159_2
unknown

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comp(1010..1417)
DNA (408bp) protein (136aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_5159_3
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

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1501..1893
DNA (393bp) protein (131aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C0U2_DESTA
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM3_127_b2_sep16_scaffold_5159_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2121..2294)
DNA (174bp) protein (58aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_5159_5
unknown

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comp(2346..2477)
DNA (132bp) protein (44aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_5159_trna_2
unknown

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comp(2520..2592)
DNA (73bp)
transferRNA Cys
PLM3_127_b2_sep16_scaffold_5159_trna_1
unknown

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comp(2621..2692)
DNA (72bp)
transferRNA Gly
PLM3_127_b2_sep16_scaffold_5159_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(2744..3742)
DNA (999bp) protein (333aa)
Galactose-1-phosphate uridylyltransferase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
galactose-1-phosphate uridylyltransferase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_5159_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3735..4748)
DNA (1014bp) protein (338aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_5159_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4745..5332)
DNA (588bp) protein (196aa)
Glycerol-3-phosphate acyltransferase bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Glycerol-3-phosphate acyltransferase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_5159_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5329..5622)
DNA (294bp) protein (98aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase bin=GWA2_Methylomirabilis_73_35 species=Syntrophomonas wolfei genus=Syntrophomonas taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pgsA; phosphatidylglycerophosphate synthase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_5159_10
unknown

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5742..5876
DNA (135bp) protein (45aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_5159_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(5890..6621)
DNA (732bp) protein (244aa)
Probable 2-phosphosulfolactate phosphatase bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-phosphosulfolactate phosphatase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_5159_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6645..7847)
DNA (1203bp) protein (401aa)
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_5159_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7840..8763)
DNA (924bp) protein (308aa)
argF; ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_5159_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8760..9956)
DNA (1197bp) protein (399aa)
argD; acetylornithine transaminase (NAcOATase and DapATase), PLP-dependent (EC:2.6.1.17 2.6.1.11) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
argD; acetylornithine transaminase (NAcOATase and DapATase), PLP-dependent (EC:2.6.1.17 2.6.1.11)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_5159_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9988..10854)
DNA (867bp) protein (289aa)
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase bin=GWA2_Methylomirabilis_73_35 species=Thermovibrio ammonificans genus=Thermovibrio taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_5159_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(10883..12229)
DNA (1347bp) protein (449aa)
ATP-dependent protease ATPase subunit HslU bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hslU; ATPase component of the HslUV protease, also functions as molecular chaperone; heat shock protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_5159_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(12258..12794)
DNA (537bp) protein (179aa)
ATP-dependent protease subunit HslV bin=GWC2_Methylomirabilis_70_16 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
20S proteasome subunits A and B
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_5159_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(12794..13693)
DNA (900bp) protein (300aa)
Tyrosine recombinase XerC bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
recombinase XerC
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_5159_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13779..15923)
DNA (2145bp) protein (715aa)
topA; DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_5159_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15920..16825)
DNA (906bp) protein (302aa)
DNA processing chain A (DprA/Smf) bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Smf; Rossmann fold nucleotide-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_5159_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17298..18512)
DNA (1215bp) protein (405aa)
molybdopterin molybdochelatase (EC:2.10.1.1)
Molybdenum cofactor synthesis domain protein bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_5159_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18727..19836)
DNA (1110bp) protein (370aa)
MopC bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mopC; protein MopC
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_5159_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19833..20339)
DNA (507bp) protein (169aa)
Alcohol dehydrogenase large subunit bin=GWA2_Methylomirabilis_73_35 species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_5159_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20341..20853)
DNA (513bp) protein (171aa)
Hypothetical membrane protein bin=GWA2_Methylomirabilis_73_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Protein of unknown function DUF3341
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_5159_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20837..21862)
DNA (1026bp) protein (342aa)
hypothetical protein; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_5159_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22142..24622)
DNA (2481bp) protein (827aa)
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
molybdopterin oxidoreductase Fe4S4 region
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 28 items

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