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PLM3_127_b2_sep16_scaffold_5880

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_5880_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(178..972)
-----------------
DNA (795bp)
protein (265aa)
3-oxoacyl-(Acyl-carrier protein) reductase {ECO:0000313|EMBL:EGP10264.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EGP10264.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
3-oxoacyl-(Acyl-carrier protein) reductase Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QES4_9BRAD
short-chain dehydrogenase/reductase SDR
PLM3_127_b2_sep16_scaffold_5880_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1083..2084
-----------------
DNA (1002bp)
protein (334aa)
Putative TIM-barrel fold metal-dependent hydrolase bin=GWC2_Methylomirabilis_70_24 species=Pseudomonas sp. GM67 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
amidohydrolase 2
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_5880_3
Moorea producens, Moorea, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(2183..2623)
-----------------
DNA (441bp)
protein (147aa)
Putative uncharacterized protein Tax=Moorea producens 3L RepID=F4XQB4_9CYAN
Putative uncharacterized protein {ECO:0000313|EMBL:EGJ33216.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Moorea.;" source="Moorea producens 3L.;"
hypothetical protein
PLM3_127_b2_sep16_scaffold_5880_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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2760..3374
-----------------
DNA (615bp)
protein (205aa)
Putative phosphoglycerate/bisphosphoglycerate mutase (EC:5.4.2.1)
Phosphoglycerate mutase bin=GWA2_Methylomirabilis_73_35 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_5880_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3371..4687
-----------------
DNA (1317bp)
protein (439aa)
hisZ; ATP phosphoribosyltransferase regulatory subunit bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hisZ; ATP phosphoribosyltransferase regulatory subunit
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_5880_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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4680..6005
-----------------
DNA (1326bp)
protein (442aa)
adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase bin=GWA2_Methylomirabilis_73_35 species=Leptospirillum ferrooxidans genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_5880_7
unknown

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6116..6436
-----------------
DNA (321bp)
protein (107aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_5880_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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6763..7764
-----------------
DNA (1002bp)
protein (334aa)
multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase (EC:1.1.1.83)
3-isopropylmalate dehydrogenase bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_5880_9
unknown

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comp(7824..8351)
-----------------
DNA (528bp)
protein (176aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_5880_10
Abiotrophia defectiva, Abiotrophia, Lactobacillales, Bacilli, Firmicutes, Bacteria

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9471..9641
-----------------
DNA (171bp)
protein (57aa)
tyrosine recombinase XerD Tax=Abiotrophia defectiva RepID=UPI0001A415F9
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Aerococcaceae; Abiotrophia.;" source="Abiotrophia defectiva ATCC 49176.;"
xerD; site-specific tyrosine recombinase XerD
PLM3_127_b2_sep16_scaffold_5880_trna_1
unknown

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10337..10409
-----------------
DNA (73bp)
transferRNA Lys
PLM3_127_b2_sep16_scaffold_5880_11
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(10743..11756)
-----------------
DNA (1014bp)
protein (338aa)
Phage integrase family protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01RK4_SOLUE
phage integrase family protein
Phage integrase family protein {ECO:0000313|EMBL:ABJ87716.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3_127_b2_sep16_scaffold_5880_12
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11753..12697)
-----------------
DNA (945bp)
protein (315aa)
Uncharacterized protein Tax=Thauera terpenica 58Eu RepID=S9ZNQ9_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ16251.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
phage integrase
PLM3_127_b2_sep16_scaffold_5880_13

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comp(12694..12996)
-----------------
DNA (303bp)
protein (101aa)
Uncharacterized protein Tax=Thauera terpenica 58Eu RepID=S9ZRV6_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:KKL73657.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
integrase/recombinase
PLM3_127_b2_sep16_scaffold_5880_14

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comp(13236..14021)
-----------------
DNA (786bp)
protein (262aa)
Putative integrase/recombinase Tax=uncultured bacterial symbiont of Discodermia dissoluta RepID=Q49HK5_9BACT
Putative integrase/recombinase {ECO:0000313|EMBL:AAY00032.1}; species="Bacteria; environmental samples.;" source="uncultured bacterial symbiont of Discodermia dissoluta.;"
integrase/recombinase
PLM3_127_b2_sep16_scaffold_5880_15
unknown

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comp(14122..14196)
-----------------
DNA (75bp)
protein (25aa)

This feature has no annotations

Displaying 16 items

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