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PLM3_127_b2_sep16_scaffold_10160

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_10160_1
BJP_IG2069_Chloroflexi_70_12, Chloroflexi, Bacteria

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47..1039
-----------------
DNA (993bp)
protein (331aa)
aryl-alcohol dehydrogenase (EC:1.1.1.91)
Aryl-alcohol dehydrogenase (NADP(+)) Tax=Nostoc sp. PCC 7107 RepID=K9QJF7_9NOSO
Tax=BJP_IG2069_Chloroflexi_70_12
PLM3_127_b2_sep16_scaffold_10160_2
GWB1_Bdellovibrionales_55_8_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

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1107..1904
-----------------
DNA (798bp)
protein (266aa)
UvrABC system protein C bin=GWB1_Deltaproteobacteria_rel_55_8 species=unknown genus=Alishewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
uvrC; UvrABC system protein C
Tax=GWB1_Bdellovibrionales_55_8_curated
PLM3_127_b2_sep16_scaffold_10160_3
Desulfovibrio vulgaris, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1916..2908)
-----------------
DNA (993bp)
protein (331aa)
Glycosyl transferase family 2 Tax=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) RepID=B8DIH2_DESVM
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ACL09270.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637).;"
PLM3_127_b2_sep16_scaffold_10160_4
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3021..3404
-----------------
DNA (384bp)
protein (128aa)
Anti-sigma factor antagonist Tax=Janthinobacterium sp. HH01 RepID=L9PAZ9_9BURK
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
anti-anti-sigma regulatory factor, SpoIIAA
PLM3_127_b2_sep16_scaffold_10160_5
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3404..4363
-----------------
DNA (960bp)
protein (320aa)
hypothetical protein Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI000378C54F
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:ELX08804.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
beta-lactamase
PLM3_127_b2_sep16_scaffold_10160_6
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4585..6567
-----------------
DNA (1983bp)
protein (661aa)
Putative chase2 sensor protein Tax=Janthinobacterium sp. HH01 RepID=L9PD84_9BURK
Serine phosphatase RsbU, regulator of sigma subunit {ECO:0000313|EMBL:KEA62171.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacterium.;" source="Marinobacterium sp. AK27.;"
stage II sporulation E family protein
PLM3_127_b2_sep16_scaffold_10160_7
Candidatus Accumulibacter sp. BA-94, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6554..7072)
-----------------
DNA (519bp)
protein (173aa)
OmpA/MotB domain protein Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RIR6_ACCPU
Root adhesin {ECO:0000313|EMBL:EXI91799.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-94.;"
OmpA/MotB domain-containing protein
PLM3_127_b2_sep16_scaffold_10160_8
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7252..7638)
-----------------
DNA (387bp)
protein (129aa)
Uncharacterized protein Tax=Janthinobacterium sp. HH01 RepID=L9PB73_9BURK
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
PLM3_127_b2_sep16_scaffold_10160_9
BJP_08E140C01_Dechloromonas_61_78, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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7750..8172
-----------------
DNA (423bp)
protein (141aa)
hypothetical protein Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI0003682418
anti-sigma-factor antagonist
Tax=BJP_08E140C01_Dechloromonas_61_78
PLM3_127_b2_sep16_scaffold_10160_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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8232..9896
-----------------
DNA (1665bp)
protein (555aa)
thiamine pyrophosphate binding domain-containing protein (EC:2.2.1.6)
Putative thiamine pyrophosphate enzyme TPP binding domain protein bin=GWC2_Methylomirabilis_70_16 species=Microcystis sp. T1-4 genus=Microcystis taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_10160_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(9901..10290)
-----------------
DNA (390bp)
protein (130aa)
id=12555498 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
twitching motility protein PilT
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_127_b2_sep16_scaffold_10160_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(10287..10493)
-----------------
DNA (207bp)
protein (69aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKY2_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3_127_b2_sep16_scaffold_10160_13
unknown

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comp(10551..11015)
-----------------
DNA (465bp)
protein (155aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_10160_14
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10988..11122)
-----------------
DNA (135bp)
protein (45aa)
Uncharacterised protein {ECO:0000313|EMBL:CRE12069.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
PLM3_127_b2_sep16_scaffold_10160_15
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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11366..12019
-----------------
DNA (654bp)
protein (218aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX01603.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Glutamyl-tRNA(Gln) amidotransferase subunit A bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidase
PLM3_127_b2_sep16_scaffold_10160_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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12110..12925
-----------------
DNA (816bp)
protein (272aa)
pigment protein Tax=Afipia birgiae RepID=UPI0002FA19A6
acyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Displaying 16 items

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