ggKbase home page

PLM3_127_b2_sep16_scaffold_2029

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2029_1
GWA2_Desulfovibrionales_65_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..468)
DNA (468bp) protein (156aa)
Molybdate-binding periplasmic protein Tax=Oscillatoria sp. PCC 6506 RepID=D8FTR3_9CYAN
molybdenum ABC transporter periplasmic molybdate-binding protein
Tax=GWA2_Desulfovibrionales_65_9_curated
PLM3_127_b2_sep16_scaffold_2029_2
R_Pseudomonas_63_210, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(630..2060)
DNA (1431bp) protein (477aa)
Phenylacetyl-CoA dioxygenase Tax=Streptomyces griseoviridis RepID=R9UUB9_STRGD
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_curated
PLM3_127_b2_sep16_scaffold_2029_3
unknown

Not on your lists

comp(2117..2335)
DNA (219bp) protein (73aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2029_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2467..3888)
DNA (1422bp) protein (474aa)
amidase (EC:3.5.1.4)
Amidase {ECO:0000313|EMBL:AGU53690.1}; EC=3.5.1.4 {ECO:0000313|EMBL:AGU53690.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Amidase Tax=Variovorax paradoxus B4 RepID=T1XNJ5_VARPD
PLM3_127_b2_sep16_scaffold_2029_5
unknown

Not on your lists

4198..4440
DNA (243bp) protein (81aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2029_6
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

4545..6233
DNA (1689bp) protein (563aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003741C12
nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like protein
Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like protein {ECO:0000313|EMBL:ABF41374.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM3_127_b2_sep16_scaffold_2029_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

6235..6957
DNA (723bp) protein (241aa)
siroheme synthase, N-terminal domain (EC:1.3.1.76 4.99.1.4)
Siroheme synthase bin=GWC2_Methylomirabilis_70_16 species=Acetonema longum genus=Acetonema taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_2029_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

6957..7742
DNA (786bp) protein (262aa)
uroporphyrinogen-III synthase/uroporphyrinogen-III C-methyltransferase (EC:2.1.1.107 4.2.1.75) bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10
uroporphyrin-III C-methyltransferase (EC:2.1.1.107 4.2.1.75)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_2029_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(7737..8747)
DNA (1011bp) protein (337aa)
branched-chain amino acid transport system permease LivM bin=bin7_NC10_sister species=Caldimonas manganoxidans genus=Caldimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC-type branched-chain amino acid transport system, permease component
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_2029_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(8800..9675)
DNA (876bp) protein (292aa)
Branched-chain amino acid ABC-type transport system, permease component bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
High-affinity branched-chain amino acid transporter permease LivH
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_2029_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(9672..10394)
DNA (723bp) protein (241aa)
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein bin=bin7_NC10_sister species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
ABC-type branched-chain amino acid transport systems, ATPase component
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_2029_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10435..11145)
DNA (711bp) protein (237aa)
Salicylaldehyde dehydrogenase (Modular protein) bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2029_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(11353..12561)
DNA (1209bp) protein (403aa)
branched-chain amino acid ABC transporter substrate-binding protein bin=bin7_NC10_sister species=Caldimonas manganoxidans genus=Caldimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
branched-chain amino acid ABC transporter substrate-binding protein
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_2029_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12638..13315)
DNA (678bp) protein (226aa)
Nitroreductase bin=GWC2_Methylomirabilis_70_16 species=Nocardioides sp. genus=Nocardioides taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
nitroreductase
Tax=GWA2_Rokubacteria_70_23_curated
PLM3_127_b2_sep16_scaffold_2029_15
unknown

Not on your lists

13435..13827
DNA (393bp) protein (131aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2029_16
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13838..14362)
DNA (525bp) protein (175aa)
Chromate transporter Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IN04_XANP2
chromate transporter
Chromate transporter {ECO:0000313|EMBL:ABS69397.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
PLM3_127_b2_sep16_scaffold_2029_17
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14359..14931)
DNA (573bp) protein (191aa)
Chromate transporter Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EJC7_METSB
chromate transporter
Chromate transporter {ECO:0000313|EMBL:ACK52619.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
PLM3_127_b2_sep16_scaffold_2029_18
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14924..15829)
DNA (906bp) protein (302aa)
Uncharacterized protein Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IN06_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS69399.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
PLM3_127_b2_sep16_scaffold_2029_19
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

15903..16298
DNA (396bp) protein (132aa)
hypothetical protein Tax=Methylococcus capsulatus RepID=UPI0002E15982
Uncharacterized protein {ECO:0000313|EMBL:KGM44045.1}; species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
Hypothetical protein
PLM3_127_b2_sep16_scaffold_2029_20
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

16514..17455
DNA (942bp) protein (314aa)
ArsR family transcriptional regulator Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEG8_GEMAT
Methyltransferase type 11
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3_127_b2_sep16_scaffold_2029_21
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17383..18087)
DNA (705bp) protein (235aa)
Signal peptidase I {ECO:0000313|EMBL:AIY18433.2}; EC=3.4.21.89 {ECO:0000313|EMBL:AIY18433.2};; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
Uncharacterized protein Tax=Alistipes sp. CAG:157 RepID=R5X3B0_9BACT
hypothetical protein
PLM3_127_b2_sep16_scaffold_2029_22
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

18219..18908
DNA (690bp) protein (230aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Adenosylhomocysteinase
Adenosylhomocysteinase bin=GWE2_Bacteroidetes_40_63 species=Fibrobacter succinogenes genus=Fibrobacter taxon_order=Fibrobacterales taxon_class=Fibrobacteria phylum=Fibrobacteres tax=GWE2_Bacteroidetes_40_63 organism_group=Bacteroidetes organism_desc=Good
PLM3_127_b2_sep16_scaffold_2029_23
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

18912..19298
DNA (387bp) protein (129aa)
carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] bin=bin7_NC10_sister species=Advenella kashmirensis genus=Advenella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
4-carboxymuconolactone decarboxylase
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_2029_24
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(19288..20385)
DNA (1098bp) protein (366aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_2029_25
unknown

Not on your lists

comp(20389..20544)
DNA (156bp) protein (52aa)

This feature has no annotations

PLM3_127_b2_sep16_scaffold_2029_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20612..21019
DNA (408bp) protein (136aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II Tax=Mycobacterium rhodesiae (strain NBB3) RepID=G8RU20_MYCRN
acyl-CoA synthetase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying 26 items

View Taxonomy