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PLM3_127_b2_sep16_scaffold_2591

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_127_b2_sep16_scaffold_2591_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(95..685)
DNA (591bp) protein (197aa)
cytochrome c3 (EC:1.7.2.2)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2591_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(778..1197)
DNA (420bp) protein (140aa)
Glyoxalase bin=GWA2_Methylomirabilis_73_35 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Glyoxalase/bleomycin resistance protein/dioxygenase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2591_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(1194..2483)
DNA (1290bp) protein (430aa)
Glutamate-1-semialdehyde 2,1-aminomutase bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glutamate-1-semialdehyde-2,1-aminomutase
Tax=GWC2_Rokubacteria_70_16_curated
PLM3_127_b2_sep16_scaffold_2591_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2476..2967)
DNA (492bp) protein (164aa)
Putative Mov34/MPN/PAD-1 family protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Mov34/MPN/PAD-1 family protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2591_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(2964..3245)
DNA (282bp) protein (94aa)
Putative Molybdopterin biosynthesis protein moeB (Modular protein) bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Molybdopterin biosynthesis protein moeB
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3_127_b2_sep16_scaffold_2591_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3319..4236)
DNA (918bp) protein (306aa)
cysK; pyridoxal-phosphate (PLP) dependent enzymes family; subunit of cysteine synthase A (O-acetylserine sulfhydrolase A) (EC:2.5.1.47)
Cysteine synthase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2591_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4236..4667)
DNA (432bp) protein (144aa)
Transcriptional regulator, Rrf2 family bin=GWA2_Methylomirabilis_73_35 species=Pseudoflavonifractor capillosus genus=Pseudoflavonifractor taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2591_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4676..5659)
DNA (984bp) protein (328aa)
hemB; Delta-aminolevulinic acid dehydratase (porphobilinogen synthase) (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2591_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5659..6492)
DNA (834bp) protein (278aa)
Uroporphyrin-III C-methyltransferase bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
uroporphyrin-III C-methyltransferase
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2591_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6492..7418)
DNA (927bp) protein (309aa)
Porphobilinogen deaminase bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
porphobilinogen deaminase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2591_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7415..8683)
DNA (1269bp) protein (423aa)
Glutamyl-tRNA reductase bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hemA; glutamyl-tRNA reductase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2591_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8685..9497)
DNA (813bp) protein (271aa)
ResC/HemX-like cytochrome c biogenesis membrane protein bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ResC/HemX-like cytochrome c biogenesis membrane protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2591_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9649..9990
DNA (342bp) protein (114aa)
id=3227805 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2591_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10124..10396
DNA (273bp) protein (91aa)
id=4555377 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2591_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

10449..12047
DNA (1599bp) protein (533aa)
formate dehydrogenase subunit alpha (EC:1.7.99.4); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] bin=bin7_NC10_sister species=Thermodesulfobacterium geofontis genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
formate dehydrogenase subunit alpha (EC:1.7.99.4)
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_2591_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

12020..13519
DNA (1500bp) protein (500aa)
formate dehydrogenase subunit alpha (EC:1.7.99.4); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] bin=bin7_NC10_sister species=Thermodesulfobacterium geofontis genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
formate dehydrogenase, alpha subunit
Tax=CSP1_6_Rokubacteria
PLM3_127_b2_sep16_scaffold_2591_17
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

13522..14328
DNA (807bp) protein (269aa)
4Fe-4S ferredoxin; K00124 formate dehydrogenase, beta subunit bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
4Fe-4S ferredoxin
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM3_127_b2_sep16_scaffold_2591_18
R_NC10_66_22, NC10, Bacteria

Not on your lists

14344..15279
DNA (936bp) protein (312aa)
Polysulfide reductase NrfD; K04015 protein NrfD bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
polysulfide reductase NrfD
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3_127_b2_sep16_scaffold_2591_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15392..16249
DNA (858bp) protein (286aa)
Uncharacterized protein involved in formate dehydrogenase formation-like protein bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
formate dehydrogenase formation protein FdhE
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2591_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16427..17200)
DNA (774bp) protein (258aa)
Putative formate dehydrogenase family accessory protein (FdhD) bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
formate dehydrogenase family accessory protein (FdhD)
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_127_b2_sep16_scaffold_2591_21
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

17444..19189
DNA (1746bp) protein (582aa)
hypothetical protein Tax=Methylobacter marinus RepID=UPI0003821871
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
PLM3_127_b2_sep16_scaffold_2591_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19102..20022)
DNA (921bp) protein (307aa)
tRNA pseudouridine synthase A (EC:5.4.99.12)
Pseudouridylate synthase I bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2591_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20033..21037)
DNA (1005bp) protein (335aa)
asd; Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2591_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21037..22122)
DNA (1086bp) protein (362aa)
leuB; 3-isopropylmalate dehydrogenase (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) (EC:1.1.1.85)
3-isopropylmalate dehydrogenase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2591_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(22272..23066)
DNA (795bp) protein (265aa)
CDP-diacylglycerol/serine O-phosphatidyltransferase bin=GWF2_Methylomirabilis_70_14 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CDP-diacylglycerol--serine O-phosphatidyltransferase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2591_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23074..23664)
DNA (591bp) protein (197aa)
psd; phosphatidylserine decarboxylase (EC:4.1.1.65) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
phosphatidylserine decarboxylase proenzyme (EC:4.1.1.65)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_127_b2_sep16_scaffold_2591_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(23715..24719)
DNA (1005bp) protein (335aa)
ilvC; Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (EC:1.1.1.86)
Ketol-acid reductoisomerase bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2591_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(24741..25316)
DNA (576bp) protein (192aa)
ilvH; acetolactate synthase small subunit (Acetohydroxy-acid synthase small subunit) (AHAS) (ALS) (EC:2.2.1.6)
Acetolactate synthase small subunit (Acetohydroxy-acid synthase small subunit) (AHAS) (ALS) bin=GWF2_Methylomirabilis_70_14 species=Methanomethylovorans hollandica genus=Methanomethylovorans taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM3_127_b2_sep16_scaffold_2591_29
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(25316..27070)
DNA (1755bp) protein (585aa)
ilvB; acetolactate synthase large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase, large subunit bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM3_127_b2_sep16_scaffold_2591_30
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(27180..28067)
DNA (888bp) protein (296aa)
Dihydrodipicolinate synthase/N-acetylneuraminate lyase bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=Galliformes taxon_class=Aves phylum=Chordata tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
dihydrodipicolinate synthetase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Displaying items 1-30 of 32 in total

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